Plant FIBer expression Database

Potri.002G116300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22860 51 / 5e-10 ATPSK2 phytosulfokine 2 precursor (.1)
AT3G49780 48 / 7e-09 ATPSK3(FORMERSYMBOL), ATPSK3(FORMERSYMBOL), ATPSK4, ATPSK3(FORMERSYMBOL), ATPSK3(FORMERSYMBOL), ATP phytosulfokine 4 precursor (.1)
AT4G37720 44 / 1e-07 ATPSK6, ATPSK4 phytosulfokine 6 precursor (.1)
AT5G65870 37 / 0.0001 ATPSK5 phytosulfokine 5 precursor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G014000
[exp]
79 / 2e-21 AT3G49780 69 / 2e-17 phytosulfokine 4 precursor (.1)
Potri.014G006900
[exp]
58 / 7e-13 AT2G22860 52 / 2e-10 phytosulfokine 2 precursor (.1)
Potri.007G006800
[exp]
56 / 6e-12 AT3G49780 60 / 1e-13 phytosulfokine 4 precursor (.1)
Potri.009G085600
[exp]
48 / 5e-09 AT3G49780 68 / 1e-16 phytosulfokine 4 precursor (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06404 PSK Phytosulfokine precursor protein (PSK)
Representative CDS sequence
>Potri.002G116300.1 pacid=42777622 polypeptide=Potri.002G116300.1.p locus=Potri.002G116300 ID=Potri.002G116300.1.v4.1 annot-version=v4.1
ATGTCTAAGCTTACAACCCTCTTCACCGTAGCCCTTCTCCTCAGCTTCGCGCTTACTTGTTCTACTCGCCCCCAGCCGGTCCTATCCGATGACTCTCTGG
ATGCCATGGCAGCTGAGGCTGCGGTTGTTGAGAGTTGTGAAGGACTAGGAGAAGAGGAGTGCTTGATGAGAAGGACCCTCGCTGCTCATGTGGATTATAT
ATATACACAGAAGCGCAAGCCATGA
AA sequence
>Potri.002G116300.1 pacid=42777622 polypeptide=Potri.002G116300.1.p locus=Potri.002G116300 ID=Potri.002G116300.1.v4.1 annot-version=v4.1
MSKLTTLFTVALLLSFALTCSTRPQPVLSDDSLDAMAAEAAVVESCEGLGEEECLMRRTLAAHVDYIYTQKRKP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22860 ATPSK2 phytosulfokine 2 precursor (.1... Potri.002G116300
[exp]
0 1
AT3G05650 AtRLP32 receptor like protein 32 (.1) Potri.012G008911
[exp]
1.00 0.9214
AT5G25930 Protein kinase family protein ... Potri.006G235500
[exp]
2.00 0.9125
AT3G48520 CYP94B3 cytochrome P450, family 94, su... Potri.005G220700
[exp]
3.46 0.9093 Pt-CYP94.7
AT5G25930 Protein kinase family protein ... Potri.006G235800
[exp]
3.46 0.9051
AT3G57540 Remorin family protein (.1) Potri.006G053200
[exp]
3.74 0.8817
AT1G70530 CRK3 cysteine-rich RLK (RECEPTOR-li... Potri.010G043900
[exp]
5.00 0.9001
AT1G28480 roxy19, GRX480 Thioredoxin superfamily protei... Potri.017G017300
[exp]
5.47 0.8901 PtrGrx3
AT5G25930 Protein kinase family protein ... Potri.006G235450
[exp]
5.65 0.8747
AT2G24260 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) Potri.018G109500
[exp]
6.16 0.8241
AT3G54420 ATCHITIV, CHIV,... CHITINASE CLASS IV, homolog of... Potri.013G125000
[exp]
6.24 0.8646 Pt-ATEP3.1

Potri.002G116300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.