Plant FIBer expression Database

Potri.002G116400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10150 387 / 8e-133 ATPP2-A10 Carbohydrate-binding protein (.1)
AT1G59510 348 / 9e-118 CF9 Carbohydrate-binding protein (.1)
AT3G49790 263 / 1e-84 Carbohydrate-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G014100
[exp]
624 / 0 AT1G10150 401 / 3e-138 Carbohydrate-binding protein (.1)
Potri.007G006600
[exp]
413 / 2e-142 AT1G10150 355 / 8e-120 Carbohydrate-binding protein (.1)
Potri.014G006800
[exp]
371 / 3e-126 AT1G10150 350 / 5e-118 Carbohydrate-binding protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012487
[exp]
441 / 3e-154 AT1G10150 439 / 2e-153 Carbohydrate-binding protein (.1)
Lus10003785
[exp]
440 / 1e-153 AT1G10150 447 / 1e-156 Carbohydrate-binding protein (.1)
Lus10007727
[exp]
432 / 8e-151 AT1G10150 429 / 1e-149 Carbohydrate-binding protein (.1)
Lus10018663
[exp]
311 / 3e-104 AT1G10150 342 / 2e-116 Carbohydrate-binding protein (.1)
Lus10039651
[exp]
265 / 3e-85 AT1G10150 298 / 2e-98 Carbohydrate-binding protein (.1)
Lus10011718
[exp]
256 / 7e-82 AT1G10150 288 / 2e-94 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G116400.1 pacid=42779309 polypeptide=Potri.002G116400.1.p locus=Potri.002G116400 ID=Potri.002G116400.1.v4.1 annot-version=v4.1
ATGGATCTTGAATTGGTGATAAAGGGTTTAGATTTTTCTAGGAGAAAAAAGAAATTGTTGATTTTTCTAGCCGTGTCTGGTGTATCTGGCTATGGGGTTT
ATAAGGTGTATAATTTGCCTGCTGTGGTAAGAAAAAGGAGGAGATTTATGAGACTTATGGGGGCTTTGATTTCTATTGCTGAGATGGTTTCCGATTCCGC
AGAGACTATCAGTATTGTCTCTAAGGATTTGAAGGAGTTTTTGCAATCTGATGCGGATAAAATCCCCAATAGTTTAAAGCAAATTTCGAAGATTGCGAAA
TCGGATGAGTTTTCCGAGTCTTTGATTGGGGTTACTCAGGCTTTGACTCTTGGGGTTCTGCGAGGGTATAATTTGGAGTCTGGAAATGATAAGAAGTTAG
GGTTAGGTTATGGGAATTCGAGTTTTTCTGATGAAGTGATGGAGAGGTTGTTTTCTAGTAAAGGGACCGGATTTGTTTCTGTTGTGGTCGGTAGTTTTGC
GAGGAATTTGGTTTTGGGGCTTTATTCGAGTGGCGAGGATCAATCAAGATCGAGTTTATCAGATGTGCCTGGATGGATTGGTGTGGTTTGTGATGATAGG
TGTAGGGAGCTCATTGCTGATTGCATACAAAAGTTTGTGAGCACGGCGGTTGCTGTTTATCTTGATAAGACGTTGCAGATCAATACTTATGATGAATTTT
TCACTGGCTTGACAAATCCAAAGCATCAAAACAATGTGAGGGACGTTCTGGTTTCTATCTGTAATGGAGCTGTGGAAACACTAGTGAAAACATCTCACCA
AGTGTTGACCACCAGTTCGACTGCAAAGTCGGGTTCTGCTTATTCAATTGTTGAGCAGGGTGAAGAATTGGGCGTGAACAAAGATGATTATCTCAAGCGG
GAAGCATGTATGAAAGATAGGAAGTCTTTTGATGAGGTTCAGAATGGTGGGTGGGTTGGCACGGTTTCATCTGCTTTGTCAGTGCCAAGCAATAGGAAGT
TTGTGCTGGATGTGACCGGGAGGGTTACATTTGAAACGATAAGGTCCATTGTGGAGTTCATGCTGTGGAAGATGTCGGATGGGGTGAAAAGAAGTCTTAA
TGTGGTTCAGGAAGAGGTTGTAGACAGGGGACTTGAAGTAGTCAGATATGTTGGGGCTAAGTCCTCTGTTATCGTTACCGTGTGCCTTGCCTTGTATTTA
CATGTTCTGGGTGGCTCTAGGGTTCTCTTAACTGCCTAA
AA sequence
>Potri.002G116400.1 pacid=42779309 polypeptide=Potri.002G116400.1.p locus=Potri.002G116400 ID=Potri.002G116400.1.v4.1 annot-version=v4.1
MDLELVIKGLDFSRRKKKLLIFLAVSGVSGYGVYKVYNLPAVVRKRRRFMRLMGALISIAEMVSDSAETISIVSKDLKEFLQSDADKIPNSLKQISKIAK
SDEFSESLIGVTQALTLGVLRGYNLESGNDKKLGLGYGNSSFSDEVMERLFSSKGTGFVSVVVGSFARNLVLGLYSSGEDQSRSSLSDVPGWIGVVCDDR
CRELIADCIQKFVSTAVAVYLDKTLQINTYDEFFTGLTNPKHQNNVRDVLVSICNGAVETLVKTSHQVLTTSSTAKSGSAYSIVEQGEELGVNKDDYLKR
EACMKDRKSFDEVQNGGWVGTVSSALSVPSNRKFVLDVTGRVTFETIRSIVEFMLWKMSDGVKRSLNVVQEEVVDRGLEVVRYVGAKSSVIVTVCLALYL
HVLGGSRVLLTA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Potri.002G116400
[exp]
0 1
AT2G39760 ATBPM3 BTB/POZ/MATH-domains containin... Potri.008G059600
[exp]
2.44 0.8344
AT5G47750 PK5, D6PKL2 D6 protein kinase like 2 (.1) Potri.016G004900
[exp]
6.70 0.7736
AT5G60250 zinc finger (C3HC4-type RING f... Potri.006G104700
[exp]
8.83 0.8318
AT3G20770 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylen... Potri.009G159200
[exp]
13.96 0.8233 EIN3A,EIN3.2
AT2G24360 Protein kinase superfamily pro... Potri.018G001800
[exp]
14.28 0.7925
AT1G65660 SMP1 SWELLMAP 1, Pre-mRNA splicing ... Potri.012G064100
[exp]
18.52 0.7721
AT3G22980 Ribosomal protein S5/Elongatio... Potri.009G152500
[exp]
20.78 0.8087
AT2G36220 unknown protein Potri.016G079500
[exp]
21.35 0.8223
AT2G44200 CBF1-interacting co-repressor ... Potri.006G000200
[exp]
28.98 0.8216
AT3G22750 Protein kinase superfamily pro... Potri.005G213200
[exp]
29.32 0.8222

Potri.002G116400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.