Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49810 556 / 0 ARM repeat superfamily protein (.1) AT5G65920 545 / 0 ARM repeat superfamily protein (.1) AT3G19380 144 / 3e-38 PUB25 plant U-box 25 (.1) AT2G35930 130 / 2e-33 PUB23 plant U-box 23 (.1) AT1G49780 127 / 4e-32 PUB26 plant U-box 26 (.1) AT3G18710 124 / 4e-31 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G64660 123 / 6e-31 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G52450 107 / 2e-25 PUB22 plant U-box 22 (.1) AT3G46510 106 / 3e-24 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 105 / 5e-24 ATPUB14 plant U-box 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014300 [exp] 743 / 0 AT3G49810 553 / 0.0 ARM repeat superfamily protein (.1) Potri.002G116600 [exp] 694 / 0 AT3G49810 546 / 0.0 ARM repeat superfamily protein (.1) Potri.006G277700 [exp] 684 / 0 AT3G49810 498 / 3e-175 ARM repeat superfamily protein (.1) Potri.009G100200 [exp] 136 / 1e-35 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.004G140100 [exp] 134 / 5e-35 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.009G016200 [exp] 124 / 3e-31 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.007G110600 [exp] 119 / 2e-29 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.016G069400 [exp] 119 / 2e-29 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.001G216100 [exp] 115 / 3e-28 AT2G35930 452 / 5e-158 plant U-box 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010598 [exp] 557 / 0 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10012491 [exp] 177 / 3e-52 AT5G65920 180 / 1e-53 ARM repeat superfamily protein (.1) Lus10005500 [exp] 129 / 5e-36 AT5G65920 135 / 3e-39 ARM repeat superfamily protein (.1) Lus10005810 [exp] 126 / 7e-32 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10043471 [exp] 120 / 5e-29 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10042798 [exp] 117 / 1e-28 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10012260 [exp] 119 / 2e-28 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10034113 [exp] 119 / 2e-28 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10016016 [exp] 118 / 2e-28 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10029771 [exp] 116 / 2e-28 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.002G116500.3 pacid=42778520 polypeptide=Potri.002G116500.3.p locus=Potri.002G116500 ID=Potri.002G116500.3.v4.1 annot-version=v4.1 ATGCCGATATTTGAAGCAAATAGCTTTAGAAACGTAAAGCTAGATGGGAGTGCTGGTGGCCAAGTTCTAGACCTAGAAACTGCCATTAAGGATGGCATTT TGGGCGGTGTTACCGGCGGCGGTTTAGTTTGTGCTGGTGTGGCGGAGAAATTGGATCTGAAGAAGATGGTTGAAGAGCTTGAATCAATAGAAGTGCCGCC GGTGTTTATATGTCCGATTTCGTTAGACCCAATGCAAGACCCAGTGACTCTTTGCACCGGACAGACTTACGAGAGATACAACATCCTCAAATGGTTCTCT CTGGGTCATTGCACGTGCCCCACAACAATGCAAGAGCTTTGGGATGATACGGTAACGCCAAACAAGACTATGCAGCAGCTGATTTATAGCTGGTTCTCGC AGAAGTTCTTAGCCACGAAGAAGAGATCAGAGGATGTGCAAGGAAGGGCTATTGAACTTCTGGATAATCTGAAGAAAGTCAAGGGTCAAGCTAAAGTGCA GACTTTGAAGGAACTTAGGCAGGTTGTGGCTGCACATTCTACGGCAAGGAAGGCTGTGCTGGATAATTGCGGGACTGCCTTGGTTACATCTTTTTTGGGC CCCTTTACCACTCATGCTGTCGGGTCTGAGGCTGTTGGAATTCTAGTGAATTTGGATCTCGATTATGCAACCAAGTCGAATTTGAGGCAACCTGCAAGGA TTTCCTTAATGGTTGATATGTTGAATGAGGGTTCTATCGAGACCAAGATTAATTGTACCCGATTGATGGAAATGTTGATGGAAGGGAATGATTTTGAGCA TGAAAACATGTCGAGCTTGAGACTTTTAGTTGGTTTGTTGAGGTTGGTGAAAGACAAGAAACACCCAAATGGGTTATTGGCTGGACTTGGTTTGTTAAAG AGTATTTGTTCACATGAATCGGTAAGGGGCTCAGTTGTGAGCATTGGGACAGTTCCTCCATTAGTGGAGCTATTGCCAAGTTTGAATAATGAGTGCTTGG AATTAGCGCTTTATATTCTGGATGTTCTTTCAAGTATTCCCGAGGGAAGATTGGCTTTGAAGGTTTGTGCCAACACAATACCGAATGTGGTGAAGTTATT GATGAGGGTTTCCGAGACATGCACGCGGCTTGCTTTGTCGATATTATGGGCAGTTTGCATGCTCGCACCAGAAGAATGTACTGCACTTGCTGTGGAGGCG GGTTTGGCAGCCAAACTACTACTAGTAATACAGAGTGCTTGCAATCCTGTGTTGAAGCAGCAATCGGTTGAGCTATTGAAATTGTGTAGTCTAAATTACA CATCTACCATTTTTATTTCCGAGTGTAAGCTTACGAGAACAATACAGTGA
AA sequence Show only first row Show all	>Potri.002G116500.3 pacid=42778520 polypeptide=Potri.002G116500.3.p locus=Potri.002G116500 ID=Potri.002G116500.3.v4.1 annot-version=v4.1 MPIFEANSFRNVKLDGSAGGQVLDLETAIKDGILGGVTGGGLVCAGVAEKLDLKKMVEELESIEVPPVFICPISLDPMQDPVTLCTGQTYERYNILKWFS LGHCTCPTTMQELWDDTVTPNKTMQQLIYSWFSQKFLATKKRSEDVQGRAIELLDNLKKVKGQAKVQTLKELRQVVAAHSTARKAVLDNCGTALVTSFLG PFTTHAVGSEAVGILVNLDLDYATKSNLRQPARISLMVDMLNEGSIETKINCTRLMEMLMEGNDFEHENMSSLRLLVGLLRLVKDKKHPNGLLAGLGLLK SICSHESVRGSVVSIGTVPPLVELLPSLNNECLELALYILDVLSSIPEGRLALKVCANTIPNVVKLLMRVSETCTRLALSILWAVCMLAPEECTALAVEA GLAAKLLLVIQSACNPVLKQQSVELLKLCSLNYTSTIFISECKLTRTIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49810			ARM repeat superfamily protein...		Potri.002G116500 [exp]	0	1
AT4G18820			AAA-type ATPase family protein...		Potri.004G061700 [exp]	11.31	0.8685
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.008G079800 [exp]	27.60	0.8395	Pt-AS2.2
AT3G22540			Protein of unknown function (D...		Potri.008G154500 [exp]	34.35	0.7532
AT3G47800			Galactose mutarotase-like supe...		Potri.017G080100 [exp]	36.00	0.8215
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003100 [exp]	42.54	0.8192
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	53.38	0.8041
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.009G070300 [exp]	69.97	0.8141
AT1G09460			Carbohydrate-binding X8 domain...		Potri.013G003500 [exp]	81.33	0.7706
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Potri.010G051100 [exp]	85.25	0.7750
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	88.54	0.8045	SQN.2

Compare expression of checked genes

Potri.002G116500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.