Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49810 546 / 0 ARM repeat superfamily protein (.1) AT5G65920 532 / 0 ARM repeat superfamily protein (.1) AT3G19380 128 / 8e-33 PUB25 plant U-box 25 (.1) AT1G49780 126 / 5e-32 PUB26 plant U-box 26 (.1) AT3G18710 119 / 2e-29 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT3G54850 113 / 8e-27 ATPUB14 plant U-box 14 (.1) AT3G46510 108 / 5e-25 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 104 / 8e-24 PUB11 ARM repeat superfamily protein (.1) AT2G28830 104 / 2e-23 AtPUB12 PLANT U-BOX 12 (.1) AT1G71020 102 / 2e-23 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G277700 [exp] 734 / 0 AT3G49810 498 / 3e-175 ARM repeat superfamily protein (.1) Potri.014G014300 [exp] 665 / 0 AT3G49810 553 / 0.0 ARM repeat superfamily protein (.1) Potri.002G116500 [exp] 656 / 0 AT3G49810 556 / 0.0 ARM repeat superfamily protein (.1) Potri.009G100200 [exp] 127 / 2e-32 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.004G140100 [exp] 127 / 3e-32 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.008G035700 [exp] 120 / 3e-29 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.007G110600 [exp] 115 / 3e-28 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.010G226500 [exp] 111 / 4e-26 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 108 / 3e-25 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010598 [exp] 546 / 0 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10012491 [exp] 184 / 9e-55 AT5G65920 180 / 1e-53 ARM repeat superfamily protein (.1) Lus10005500 [exp] 136 / 1e-38 AT5G65920 135 / 3e-39 ARM repeat superfamily protein (.1) Lus10016016 [exp] 126 / 6e-31 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10012260 [exp] 125 / 9e-31 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10043471 [exp] 121 / 2e-29 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 122 / 3e-29 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10037970 [exp] 109 / 2e-25 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 107 / 1e-24 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 105 / 4e-24 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.002G116600.1 pacid=42779193 polypeptide=Potri.002G116600.1.p locus=Potri.002G116600 ID=Potri.002G116600.1.v4.1 annot-version=v4.1 ATGCCGATGTATCAGCCAAATAGCCATAGAAATTTAAGGCTAGATGTGGGTGCTGGTGGACAAATCCTGGATCTAGAAACAGCCATTAAAGATGGCATTT TGGGCGGCGGCGGCGGTTTAGTTTGTGCTGGCGTGACGGAGAAATTGGATCTGAAGAAGATGATTGAGGAGCTTGAATCAATAGAAGTGCCATCCGTGTT TATATGTCCAATTTCATTGGACCCTATGCAAGACCCAGTGACTCTCTGCACTGGACAGACTTACGAGAGATCCAACATTCTCAAATGGTTCTCTTTGGGT CATTGCACGTGCCCCACTACAATGCAAGAGCTTTGGGATGATACGGTGACGCCAAACAGGACTTTGCAGCAGCTGATTTATAGCTGGTTCTCGCAGAAGT ATTTGGCTATGAAGAAGAGATCAGAGGACGTGTTAGGGAGGGCCACTGAGCTTTTGGATTCTTTAAAGAAGGTTAAGGGTCAAGCTAGAGTGCAAACTTT GAAGGAGCTAAGGCATGTTGTGGTTGCCCATTCAATGGCGAAGAAAACAGTGATGGATAAGGGTGGAGTTGCCTTGATTTCTACTTTATTGGGTCCTTTT ACGACTCATGCTGTAGGGTCTGAGGTAATTGGTATTCTTGTGAATTTGGATCTTGATTTGCCATCCAAGGCAAATTTGAGGCAGCCTGCAAAGATTTCCT TAGTTGTGGATATGTTGAATGAGGGTTCGATTGAGACCAAGATTAATTGTACGAAATTGATCGAAATGTTGATTGGAAGAAAAGATTTGGGATCAGAAAA TGTGTCAAGTTTGAGTCTTTTGGCGGGTTTGTTGAGGTTGGTGAAAGATAAGAGACACCCCAATGGAGTATTGGCTGGACTCGGTTTGTTAAATACCATA TGTTTAGATGAATCTGTTAGGAACTCAGTTGTGAGCATTGGGGCAGTTCCTCCATTAGTGGAGCTATTGCCCGGTTTGAATAATGAGTGCTTGGAATTAG CACTTCATATTTTGGAGGTTCTGTCGACCATTCCGGAGGGTAGATTGGCTTTGAAGGACTGTGCCAACACAATCCCTAATGTGGTCAAGTTTTTGATGAG CAAATCAGAGAGCTGTACTCAGCTTGCATTATCAATACTGTGGGCGGTTTGCAATCTTGCACCAGAAGAATGTGCAGCACTTGCTGTGGAGGCAGGTTTG GCAGCGAAACTACTTCTTGTAATACAGAGTGGCTGCAATCCTGTGTTGAAGCAGCGGTCAGTTGAGCTCCTGAAACTGTGTAGTCTAAATTACACGGCTA CTATATTTATTTCCAAGTGTAAGCTTTCCAGAACGATAGAGTGA
AA sequence Show only first row Show all	>Potri.002G116600.1 pacid=42779193 polypeptide=Potri.002G116600.1.p locus=Potri.002G116600 ID=Potri.002G116600.1.v4.1 annot-version=v4.1 MPMYQPNSHRNLRLDVGAGGQILDLETAIKDGILGGGGGLVCAGVTEKLDLKKMIEELESIEVPSVFICPISLDPMQDPVTLCTGQTYERSNILKWFSLG HCTCPTTMQELWDDTVTPNRTLQQLIYSWFSQKYLAMKKRSEDVLGRATELLDSLKKVKGQARVQTLKELRHVVVAHSMAKKTVMDKGGVALISTLLGPF TTHAVGSEVIGILVNLDLDLPSKANLRQPAKISLVVDMLNEGSIETKINCTKLIEMLIGRKDLGSENVSSLSLLAGLLRLVKDKRHPNGVLAGLGLLNTI CLDESVRNSVVSIGAVPPLVELLPGLNNECLELALHILEVLSTIPEGRLALKDCANTIPNVVKFLMSKSESCTQLALSILWAVCNLAPEECAALAVEAGL AAKLLLVIQSGCNPVLKQRSVELLKLCSLNYTATIFISKCKLSRTIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49810			ARM repeat superfamily protein...		Potri.002G116600 [exp]	0	1
AT3G49810			ARM repeat superfamily protein...		Potri.014G014300 [exp]	6.48	0.8939
AT2G17550			unknown protein		Potri.005G101700 [exp]	7.61	0.7839
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Potri.006G098700 [exp]	15.19	0.8367
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	15.29	0.8470
AT5G57130			Clp amino terminal domain-cont...		Potri.018G140900 [exp]	20.85	0.8333
AT3G14470			NB-ARC domain-containing disea...		Potri.017G128000 [exp]	29.93	0.7536
AT5G13980			Glycosyl hydrolase family 38 p...		Potri.014G143600 [exp]	31.01	0.7991
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.010G043200 [exp]	33.09	0.7739
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.015G010100 [exp]	34.49	0.8194
AT1G11120			unknown protein		Potri.004G037200 [exp]	35.09	0.8156

Compare expression of checked genes

Potri.002G116600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.