Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48570 553 / 0 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 539 / 0 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT1G58450 173 / 7e-51 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G54010 172 / 4e-46 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT3G21640 109 / 7e-26 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G30480 67 / 4e-12 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G25220 64 / 8e-12 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT5G48580 63 / 3e-11 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT5G05420 62 / 3e-11 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G55520 61 / 2e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248300 [exp] 568 / 0 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 526 / 0 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 466 / 4e-159 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G105100 [exp] 167 / 2e-44 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.001G264400 [exp] 102 / 1e-23 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G059200 [exp] 102 / 2e-23 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.018G100700 [exp] 70 / 7e-13 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 68 / 2e-12 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.002G248200 [exp] 63 / 1e-11 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003171 [exp] 564 / 0 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 556 / 0 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 538 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 535 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10022603 [exp] 174 / 6e-47 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10021502 [exp] 170 / 3e-45 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10029505 [exp] 98 / 2e-22 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10039604 [exp] 72 / 2e-13 AT3G21640 327 / 3e-110 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10004714 [exp] 68 / 7e-13 AT3G55520 265 / 3e-91 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10040280 [exp] 67 / 9e-13 AT3G55520 263 / 1e-90 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G117200.1 pacid=42777557 polypeptide=Potri.002G117200.1.p locus=Potri.002G117200 ID=Potri.002G117200.1.v4.1 annot-version=v4.1 ATGGGTGTAGAGAAAGGGACTCGTGATTCAGACATTGAACACGAGGAAGACCTCGATGAAGAACCAGGGGAGGTGATCGAATCAGCTCCTCCTCTCAAGG TTGGCGAAGAGAGAGAGCTTGGTAATTCTGGTATAAAGAAGAAGCTCCTCAAGCGTGGCCTTGGCTGGGAAACTCCAGAATTCAATGATGAAGTCACTGT TCATTATGTGGGCACATTACTTGATGGTACTAAGTTTGATTCCACAAGAGATAGGGATTCATCTGTGATTATGAAACTTGGTCAAGGGGAAGTGGTGGCT GGATTGGATCATGGGATCATTACCATGAAAAAGGGCGAACGTGCATTGTTCACGTTGCCTCCTGAATTGGGCTTTGGAGTGACAGGGCGTGATGCTGTGC CGACGAATTCTTTTGTTCGATATGAGGTTGAGCTTGTTTCGTGGATTAAGGTGGTGGATGTGAGCAAAGATGGTGGAATTATAAAGAAAATTGTGGAGAA GGGAGATAAGCACGACCGTCCTGGTGATTTAGATGAAGTCCTTGTGAAGTATCAGGTGGCCCTTGCTGATGGCACTATTGTGGCAAAAACACTAGAAGAA GGAATTGAGTTTTATGTAAAAGATGGTCATCTATGTCCAGCATTGCCAAAAGCAACCATGACCATGAAAAGGGGAGAGAAAGTCAAACTAGTTGTTCAGC CTCAATATGCTTATGGACAGGAAGGAAAAGATGCTAGTGATGCAATCTGTCCAGTCCCACCAAATTCTACTCTGTACATTGATCTGGAGCTAACATCCTT TAAGCCTGTTATTGATGTTACTGGTGATGCTAAGGTCTTCAAGAAGATCCTGAAAGAGGGGGAGGGCTCCCTTGTTGCAAATGAAGGTGCAACAGTAACC ATTAGCTATACAGCTAGGCTAGAGGATGGAACTGTGTTTGAAAGAAAAGGAATTGATGATGGGCAGCCTTTGCAATTTATAACAGATGAAGAGCAAGTGA TCGCAGGTTTAGACCGAGCTGTGGCAACAATGAAGAAGGGGGAATATGCAATATTAACAGTAAAGCCAGAATACGGCTTTGGAAACGTTGAAACAAAGAG GGATCTTGCTATTGTACCCCCATCATCAATCTTAGTCTATGAAGTTGAAATGTCAGATTTTATTAAGGAGAAAACACCATGGGAGATGAATAATCAGGAG AAAATTAAGGCTGCCGAGAGAAAGAAAGAAGAAGGAAACCTGCTATTTAAAAGTGGGAAGTATCTAAGAGCTGGGAAAAAGTATGATAAGGCTGCAAGTT ATGTTGGTGAAGAGGAAGTTTTTGGGGATGATGAGCAAGAGCTGGTAACAGCAATGAGAGTAACTTGCTGGCTGAACAAGGCAGCATGTAGCCTCAAACT TAATGATTTTCAGGGAGCAATCAAGTTATGTTCAAAGGTACTGGATATTGAGTTCTACAACATAAAAGCCCTTTATAGGCGGGCACAAGCACTGATCCAA ACTACAGATTTGGTCTCAGCTGACATGGACATTAAGAAAGCTCTTGAAGTTGATCCTCAAAACAGGGAGGTGAAGTTAATTCAGAAGACATTGAAACAAC TTCAAGCAGAAAGTAACAAGAGAGATGCAAAGCTCTATTCCAACATGTTTGCGGATATGACAAAGCAAACATCTGCCATAACCAAGAAATTGAAAGTCGA GAGAGCAGACGATGACATGAAAAATGTAGAGGCTGTGGCAATGGAAATGGGAAATGTTGCTGATAGTTCATATCCACCTGACAATGCAAAGGCTGTTGAT TCCTGTTAG
AA sequence Show only first row Show all	>Potri.002G117200.1 pacid=42777557 polypeptide=Potri.002G117200.1.p locus=Potri.002G117200 ID=Potri.002G117200.1.v4.1 annot-version=v4.1 MGVEKGTRDSDIEHEEDLDEEPGEVIESAPPLKVGEERELGNSGIKKKLLKRGLGWETPEFNDEVTVHYVGTLLDGTKFDSTRDRDSSVIMKLGQGEVVA GLDHGIITMKKGERALFTLPPELGFGVTGRDAVPTNSFVRYEVELVSWIKVVDVSKDGGIIKKIVEKGDKHDRPGDLDEVLVKYQVALADGTIVAKTLEE GIEFYVKDGHLCPALPKATMTMKRGEKVKLVVQPQYAYGQEGKDASDAICPVPPNSTLYIDLELTSFKPVIDVTGDAKVFKKILKEGEGSLVANEGATVT ISYTARLEDGTVFERKGIDDGQPLQFITDEEQVIAGLDRAVATMKKGEYAILTVKPEYGFGNVETKRDLAIVPPSSILVYEVEMSDFIKEKTPWEMNNQE KIKAAERKKEEGNLLFKSGKYLRAGKKYDKAASYVGEEEVFGDDEQELVTAMRVTCWLNKAACSLKLNDFQGAIKLCSKVLDIEFYNIKALYRRAQALIQ TTDLVSADMDIKKALEVDPQNREVKLIQKTLKQLQAESNKRDAKLYSNMFADMTKQTSAITKKLKVERADDDMKNVEAVAMEMGNVADSSYPPDNAKAVD SC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.002G117200 [exp]	0	1
AT5G49960			unknown protein		Potri.003G008800 [exp]	1.00	0.8979
AT1G35660			unknown protein		Potri.019G083100 [exp]	5.83	0.8785
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.014G193400 [exp]	7.74	0.8391	Pt-MRP5.2
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.008G026900 [exp]	9.48	0.8459
					Potri.002G154150 [exp]	9.48	0.8637
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Potri.014G164900 [exp]	12.48	0.8386
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	14.49	0.8434
					Potri.019G081450 [exp]	15.49	0.8484
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Potri.004G214300 [exp]	18.65	0.7758	Pt-PNATH.2
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.009G015700 [exp]	19.69	0.8681	Pt-PM37.1

Compare expression of checked genes

Potri.002G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.