Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10130 1649 / 0 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT1G07670 767 / 0 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 764 / 0 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT4G00900 760 / 0 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT3G57330 301 / 8e-87 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 297 / 2e-85 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT5G57110 290 / 2e-82 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G22910 281 / 1e-79 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT4G37640 271 / 3e-76 ACA2 calcium ATPase 2 (.1) AT4G29900 270 / 8e-76 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014700 [exp] 1836 / 0 AT1G10130 1659 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.009G025700 [exp] 754 / 0 AT1G07670 1743 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.001G233400 [exp] 743 / 0 AT1G07670 1800 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.014G101900 [exp] 727 / 0 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.016G043100 [exp] 300 / 2e-86 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.013G040201 [exp] 297 / 2e-85 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G046500 [exp] 287 / 9e-82 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.005G052700 [exp] 284 / 8e-81 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G020600 [exp] 283 / 2e-80 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007734 [exp] 1631 / 0 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018668 [exp] 1547 / 0 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10042843 [exp] 748 / 0 AT1G07670 1799 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10028139 [exp] 746 / 0 AT1G07670 1798 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10023328 [exp] 689 / 0 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10038484 [exp] 509 / 1e-166 AT1G07670 816 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10035439 [exp] 272 / 2e-76 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10004086 [exp] 264 / 2e-75 AT3G63380 1039 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10031053 [exp] 268 / 3e-75 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10018687 [exp] 268 / 5e-75 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF13246 [poplar] [flax] Cation_ATPase Cation transport ATPase (P-type)
Representative CDS sequence Show only first row Show all	>Potri.002G117400.1 pacid=42777713 polypeptide=Potri.002G117400.1.p locus=Potri.002G117400 ID=Potri.002G117400.1.v4.1 annot-version=v4.1 ATGGAAGACGCGTACGCCAGATCCATCGCCGAGGTTTTGGATTTTTTTGGGGTAGACCCTATGAAAGGGCTCAGCGATTCTCAGGTGACGCTACATTCAA AAATTCACGGTAAAAACGTGCTGCCTGAAGAGACAAGGACTCCCTTTTGGAAATTAGTTCTAAAACAGTTCGATGATTTGCTTGTTAAAATATTGATTGC TGCTGCCGCTGTTTCTCTTGTTTTGGCTTTGATTAATGGGGAAACTGGCTTGACAGCTTTTTTGGAGCCTTTTGTCATCTTGTTGATTTTGGCTGCCAAT GCAGCTGTAGGTGTAATTACAGAAACAAATGCTGAGAGGTCTCTTGAGGAATTACGTGCCTATCAAGCTGATATTGCTACCGTGCTGCGAAATGGTTGTT TTTCCATCCTTCCTGCTACCGAGCTTGTTCCAGGTGATATTGTGGAAGTCAGTGTGGGATGCAAGGTTCCAGCTGACATGAGAATGATTGAAATGTTAAG TAATCAGCTACGTGCTGATCAAGCAATCCTTACTGGTGAGAGCTGTTCTGTTGAAAAAGAGCTTGAGGTCACCATAGCAACAAATGCTGTATACCAGGAC AAAACGAATATTCTCTTCTCGGGTACAGTAGTGGTTGCGGGTAGGGCAAGAGCTGTTGTTGTTGGAGTTGGAGCTAATACTGCCATGGGGAGCATCCGTG ATTCCATGTTGCATACAGATGATGAGGTGACTCCATTAAAGAAGAAGCTGGATGAATTTGGCACTTTTTTGGCTAAGGTTATTACGGGGATTTGTATACT TGTGTGGATTGTAAACATTGGTCACTTCCACGACCCTTCTCATGGTGGGTTTTTGCGCGGTGCAATCCACTATTTCAAGATTGCAGTTGCTCTTGCGGTT GCAGCAATTCCTGAAGGGCTTCCAGCAGTTGTTACAACGTGTTTGGCTCTTGGAACAAAACGTATGGCTCGGTTGAATGCCATTGTGCGGTCGTTGCCAT CCGTTGAAACTTTAGGCTGCACTACAGTAATCTGCAGTGACAAGACCGGAACATTGACAACTAATATGATGTCTGTTTCAAAGATATGTGTTGTTCATTC CGTTCATCATGGTCCAACAATTGCTGAATACAGTGTGAGTGGGACAAGTTATGCTCCAGAAGGCATTATTTTTGGCAGTTCTGGCATGCAGATTCAGTTT CCAGCTCAGTTGCCTTCTCTTCTTCATGTGGCTATGTGTTCAGCCATTTGCAATGAGTCTATCTTACAGTACAATCCAGACAAGGGAAGCTATGAAAAAA TTGGGGAGTCCACTGAAGTAGCGCTACGTGTTCTGGCGGAGAAGGTTGGCCTTCCTGGTTTTGATTCCATGCCTTCTGCACTGCATATGTTGAGCAAGCA TGAGCGTGCTTCATACTGTAATCACTATTGGGAAAGCCAATTCAAAAAGGTTTCTGTTTTGGAATTCTCTCATGATCGAAAGATGATGTCTGTCTTATGT AGTCAGAAGCAGAAGGAGATTATGTTTTCAAAAGGTGCTCCAGGAAGTATTGTTTCTAGATGCTCCAATATTCTTTGCAACGATGATGGTTCCACTGTTC CGTTTTCTGCCGCAGTCCGAGATGAGTTAGAGTCAAGGTTCCGCAGTTTTGCAGGAAAAGAAACATTGAGATGCCTGGCTCTAGCTTTCAAACAGATGCC CATTGGTCAACAGACTCTCTCATTTGAGGATGAGAAGGACCTTACATTTATTGGGTTGGTTGGAATGCTTGATCCTCCTAGAGAGGAAGTGAGAAATGCT ATGCTTTCATGTATGACTGCTGGAATACGTGTTATAGTTGTCACTGGGGATAACAAGTCAACAGCAGAATCACTTTGTAATAAGATTGGTGCTTTTGATC ATTTGGAAGATTTTGCTGGACACTCATACACTGCTTCTGAGTTTGAAGAGCTTCCTGCTTTGCAGCGAACACTGGCTTTGCAACGCATGACACTTTTTAC CAGAGTTGAACCTAGTCATAAAAGGATGCTGGTGGAGGCCTTACAACATCAAAATGAAGTGGTGGCAATGACTGGTGATGGGGTTAATGATGCACCTGCA CTAAAGAAAGCAGATATAGGAATTGCAATGGGATCTGGAACAGCAGTTGCAAAGAGTGCTTCGGATATGGTTTTGGCAGATGACAATTTTGCTTCCATTG TAGCGGCTGTTGCGGAGGGAAGGGCTATTTACAATAACACAAAGCAATTCATCAGATACATGATCTCATCAAATATTGGTGAAGTTGTTTGTATCTTTGT GGCAGCTGTAATTGGAATACCTGATACCCTTGCTCCTGTCCAACTGCTCTGGGTCAATTTGGTTACTGATGGATTGCCCGCAATTGCTATTGGTTTCAAC AAGCAAGATTCTGATGTGATGAAGGCTAAACCTCGCAAGGTGAATGAAGCAGTTGTTAGCGGGTGGCTGTTTTTTCGTTATTTGGTAATTGGAGCTTATG TGGGCCTTGCAACTGTTGCTGGGTTCGTGTGGTGGTTTGTGCACTCTGATAGCGGTCCCAAACTACCATTCAAGGAACTGATGAATTTTGACAGTTGCTC GACAAGGGAGACAAATTACCCATGTAGTATATTTGATGATAGGCATCCATCAACTGTATCCATGACAGTGCTTGTTGTTGTTGAGATGTTTAATGCTTTG AATAATCTCAGTGAGAATCAATCGCTTCTTGTTATCCCTCCCTGGAGTAATTTATGGCTTGTTGCTTCAATTGTCCTGACTATGCTCCTTCACATACTGA TCTTGTATGTGCACCCACTATCTACTCTATTCTCTGTAATGCCGTTATCTTGGATTGAGTGGAAAGTTGTCTTATATCTCTCCTTCCCTGTCATAATTAT TGACGAAGTTTTAAAGTTCTTCGCGAGAAATTCCAAGGGCTTCAGGTTTGGTTTGAGATTCAGAAGGCCTGATTTACTTCCAAAAAGAGAATTGCGTGAT AAGTGA
AA sequence Show only first row Show all	>Potri.002G117400.1 pacid=42777713 polypeptide=Potri.002G117400.1.p locus=Potri.002G117400 ID=Potri.002G117400.1.v4.1 annot-version=v4.1 MEDAYARSIAEVLDFFGVDPMKGLSDSQVTLHSKIHGKNVLPEETRTPFWKLVLKQFDDLLVKILIAAAAVSLVLALINGETGLTAFLEPFVILLILAAN AAVGVITETNAERSLEELRAYQADIATVLRNGCFSILPATELVPGDIVEVSVGCKVPADMRMIEMLSNQLRADQAILTGESCSVEKELEVTIATNAVYQD KTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLHTDDEVTPLKKKLDEFGTFLAKVITGICILVWIVNIGHFHDPSHGGFLRGAIHYFKIAVALAV AAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVHHGPTIAEYSVSGTSYAPEGIIFGSSGMQIQF PAQLPSLLHVAMCSAICNESILQYNPDKGSYEKIGESTEVALRVLAEKVGLPGFDSMPSALHMLSKHERASYCNHYWESQFKKVSVLEFSHDRKMMSVLC SQKQKEIMFSKGAPGSIVSRCSNILCNDDGSTVPFSAAVRDELESRFRSFAGKETLRCLALAFKQMPIGQQTLSFEDEKDLTFIGLVGMLDPPREEVRNA MLSCMTAGIRVIVVTGDNKSTAESLCNKIGAFDHLEDFAGHSYTASEFEELPALQRTLALQRMTLFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPA LKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVIGIPDTLAPVQLLWVNLVTDGLPAIAIGFN KQDSDVMKAKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFVWWFVHSDSGPKLPFKELMNFDSCSTRETNYPCSIFDDRHPSTVSMTVLVVVEMFNAL NNLSENQSLLVIPPWSNLWLVASIVLTMLLHILILYVHPLSTLFSVMPLSWIEWKVVLYLSFPVIIIDEVLKFFARNSKGFRFGLRFRRPDLLPKRELRD K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.002G117400 [exp]	0	1
AT1G50440			RING/FYVE/PHD zinc finger supe...		Potri.008G005800 [exp]	2.00	0.8684
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.014G134800 [exp]	4.69	0.8577	TIR1.2
AT5G07610			F-box family protein (.1)		Potri.008G016300 [exp]	6.24	0.8754
AT5G46250			RNA-binding protein (.1.2.3)		Potri.011G080700 [exp]	6.32	0.8578
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.013G088400 [exp]	6.48	0.8634
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	6.63	0.8159
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.014G153500 [exp]	7.93	0.8171	AXR1.3
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	9.16	0.8620
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	9.79	0.8522
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G037900 [exp]	10.95	0.8055

Compare expression of checked genes

Potri.002G117400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.