Plant FIBer expression Database

Potri.002G117900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12350 373 / 1e-126 F-box family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G252200
[exp]
49 / 5e-06 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1)
Potri.008G006300
[exp]
47 / 1e-05 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018673
[exp]
530 / 0 AT3G12350 365 / 1e-123 F-box family protein (.1.2)
Lus10007749
[exp]
314 / 1e-105 AT3G12350 217 / 3e-68 F-box family protein (.1.2)
Lus10010606
[exp]
150 / 5e-44 AT3G12350 106 / 6e-29 F-box family protein (.1.2)
Lus10007750
[exp]
146 / 3e-42 ND 103 / 1e-27
Lus10010607
[exp]
112 / 5e-30 AT3G12350 72 / 4e-16 F-box family protein (.1.2)
Lus10037697
[exp]
42 / 0.0008 AT5G39450 544 / 0.0 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF12937 F-box-like F-box-like
Representative CDS sequence
>Potri.002G117900.1 pacid=42778844 polypeptide=Potri.002G117900.1.p locus=Potri.002G117900 ID=Potri.002G117900.1.v4.1 annot-version=v4.1
ATGGCAGAACCAAACCTCAATTCCTTCTCTGATTTTCCTGAAGACGTCCAATTCTGCATCCTCTCGTTCCTAAGCCCAACAGAAATCGCCAATTTCGCCT
CCACTTCAAAACGGTACGCCCCTCTCTGTCAAAGCGACAGCAAACTCTGGCACTCACTTTGCGACAGGAGGTGGGGCTCAAAGACCCAAATCAATAAATG
GGGTAACGGTCAAATCTCCTATAAATTGCTCTACAAAACGCTTAACAAATGGGAAAATCTGATCGGTTTCTGGCGTCGTTGCGGTCAAAGTCAACAGAAA
GAAACGGTGAAGCCGCCGTCGTTAGTTTTCTTCGAGTGGGGCTCTTCGTTTCTCTCCGGTTGGAGAGTCTCTCCGTCTCAAAACGCCTATAGCGTCATAA
AGTCTCCATTCTTGTGGATAAGTATTTCGCCCGAGGGTGAAATTGTGAATTATTTGGATCCAGAGGGGCAAAACAAGAATAAATTATTTGGTGAATTGGG
GTATTTAGATATGGATGTAGTTCCCGTTAACGTGAATTTTATCGGGGACTCACATTTTAGCGTGGAGGAGAATGTGAATTTTGCTTACAGAAGGAGTTTG
AGTTCCGGGAATTTGAAAGGAGAGGATAACGGAGAAGATATTGTTAGTGTTGAAAGTGGATCAACAGGGAGTTTACCGGAAACATTTGAGATTTATCAGT
ATTATGCAAACAGGATGAGTCCAGGCGCGGATAGAGCGATAAGGAGGCAGAGGAGGCGAGAAAAGGAGAAGCAGGGGAAGAAGAGGTGGGAGACTGAGCA
TTTTTTGAAGATTGTTGATTCATCACCCACGCTTGATCGGCCTTTGCAGGGTCTGTGGAAGGGAATCTGTGAGGACATGAAGTTGGAATTTTATCTTGTG
GCATATGATGAATTTGGCATCTCCTGCCGAAGAGTTGGCGACTTGTCTGAGCGTCGCTCTAGTTCTACACCAGTGTTTTGGACGTCAGATCCTACTTTTG
TAGAGTCCCCTTTTCCAACTGAGGAAGAATATATATATGATTCTCGGATTCATATTCAGCCACCTGAAGCTGCAAACTTGGATTGGAAATTCCCTTTAGA
AAATGATGTGGTCTCTCGCATTATGTATATTAACTCAAGTTATGATTTAGTAATCCTGGGAGTGGAAGGAGCTTCTGTGAATCCTTGGCGAGTTGAAGGA
AGAGTTTGGCAGTACAGGAATGGGACGTTTGGATATGGCTTTCTTCGGGACCATTTTATTGTGGACCTGAAGCACATTGCCAAAAATGGTTGTCTTCTTG
ATATCCCCGTAGACTTGTAG
AA sequence
>Potri.002G117900.1 pacid=42778844 polypeptide=Potri.002G117900.1.p locus=Potri.002G117900 ID=Potri.002G117900.1.v4.1 annot-version=v4.1
MAEPNLNSFSDFPEDVQFCILSFLSPTEIANFASTSKRYAPLCQSDSKLWHSLCDRRWGSKTQINKWGNGQISYKLLYKTLNKWENLIGFWRRCGQSQQK
ETVKPPSLVFFEWGSSFLSGWRVSPSQNAYSVIKSPFLWISISPEGEIVNYLDPEGQNKNKLFGELGYLDMDVVPVNVNFIGDSHFSVEENVNFAYRRSL
SSGNLKGEDNGEDIVSVESGSTGSLPETFEIYQYYANRMSPGADRAIRRQRRREKEKQGKKRWETEHFLKIVDSSPTLDRPLQGLWKGICEDMKLEFYLV
AYDEFGISCRRVGDLSERRSSSTPVFWTSDPTFVESPFPTEEEYIYDSRIHIQPPEAANLDWKFPLENDVVSRIMYINSSYDLVILGVEGASVNPWRVEG
RVWQYRNGTFGYGFLRDHFIVDLKHIAKNGCLLDIPVDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12350 F-box family protein (.1.2) Potri.002G117900
[exp]
0 1
AT3G66654 Cyclophilin-like peptidyl-prol... Potri.008G105800
[exp]
2.82 0.8291
AT3G04800 ATTIM23-3 translocase inner membrane sub... Potri.013G039200
[exp]
5.09 0.8411
AT3G48070 RING/U-box superfamily protein... Potri.012G074500
[exp]
5.29 0.8373
AT3G62770 ATATG18A autophagy 18a, Transducin/WD40... Potri.005G026600
[exp]
5.65 0.8349
AT5G10270 CDKC;1 cyclin-dependent kinase C;1 (.... Potri.012G003700
[exp]
9.79 0.8141 CDC2.6
AT5G22080 Chaperone DnaJ-domain superfam... Potri.001G215800
[exp]
10.48 0.8176
Potri.001G371500
[exp]
10.72 0.8348
AT5G13750 ZIFL1 zinc induced facilitator-like ... Potri.010G248401
[exp]
11.66 0.8047
AT4G27950 AP2_ERF CRF4 cytokinin response factor 4 (.... Potri.002G167400
[exp]
12.36 0.8179
AT3G48800 Sterile alpha motif (SAM) doma... Potri.003G164600
[exp]
14.42 0.8141

Potri.002G117900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.