Plant FIBer expression Database

ZCF37.1 (Potri.002G118200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ZCF37.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G59590 81 / 4e-18 ZCF37 ZCF37 (.1)
AT1G10220 73 / 5e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G015800
[exp]
291 / 4e-99 AT1G59590 101 / 9e-26 ZCF37 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007746
[exp]
91 / 3e-21 AT1G59590 118 / 5e-32 ZCF37 (.1)
PFAM info
Representative CDS sequence
>Potri.002G118200.1 pacid=42777148 polypeptide=Potri.002G118200.1.p locus=Potri.002G118200 ID=Potri.002G118200.1.v4.1 annot-version=v4.1
ATGTTGAATTCATTCATTTGTGGCAGTTTTCAGAATCAAGAGCTAGAGGATGAACCATGGAACAGCCCTTCTTCGACACCAAAGAGATCCAGCCCTTCTG
CAACACCAAAAAGATCGAGCCCTTGTGCAACGCCAAGAAAATCAAGAAAGAGCAGCAAGAATAACAAGAACCCATATTCTTCCCGTGGCCTTGACAAATT
CTCTGCACTTCTCGCGGAACTCGAAGAGAAAAGGCAGAAGATATACACTCAGATTGGGCCTGAAGATGTATCTGTGGTTCGTTTCGTCTATTCAAGTTCA
AATGATTGTATTCCTGTTATAGTGAAGGCTAAAGATCAAAAGCAAGACAAACCCAGGGCCAGCAGAGTTGATGATGTCAAAGATAAGCCCATCAATCATA
ACAGTACTGAAGTTGTGTATAAGTTGCCAACACAGGCACCCGCAGAGACGAAACAAGCCGAGCAACCAAGATTGGAAACTGACAAAAAGACTGAGAAGAA
ATGTTTTACATGGAGCATCAAGTTGAATAGATGGAGAAGACCCTATTATTATATGCCAGTTGCTATAGTCTTGATCTTGTTATTGTTGGTTTTCTTTGGG
CGATCAGTTGCTATATTATGGACCTCTCTGGGATGGTATATAGTCCCTACATTGAGTACAAAAAAGCCATCAAAGAAGAAAGAAGATGTTAGAAGATTAA
GCGAGCCCAAGATGGTGATTAATCATGGGGTATCTTCTCCAAAGAGAAAGAGTACTGGCGCTATCACAGATAAATTGCCTCAACGACATGAGCAACGAAA
AAGCTTCTGA
AA sequence
>Potri.002G118200.1 pacid=42777148 polypeptide=Potri.002G118200.1.p locus=Potri.002G118200 ID=Potri.002G118200.1.v4.1 annot-version=v4.1
MLNSFICGSFQNQELEDEPWNSPSSTPKRSSPSATPKRSSPCATPRKSRKSSKNNKNPYSSRGLDKFSALLAELEEKRQKIYTQIGPEDVSVVRFVYSSS
NDCIPVIVKAKDQKQDKPRASRVDDVKDKPINHNSTEVVYKLPTQAPAETKQAEQPRLETDKKTEKKCFTWSIKLNRWRRPYYYMPVAIVLILLLLVFFG
RSVAILWTSLGWYIVPTLSTKKPSKKKEDVRRLSEPKMVINHGVSSPKRKSTGAITDKLPQRHEQRKSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G59590 ZCF37 ZCF37 (.1) Potri.002G118200
[exp]
0 1 ZCF37.1
AT1G66400 CML23 calmodulin like 23 (.1) Potri.017G126200
[exp]
2.23 0.8498 Pt-TCH2.1
Potri.003G124000
[exp]
4.89 0.8516
AT1G68765 IDA INFLORESCENCE DEFICIENT IN ABS... Potri.008G114600
[exp]
9.48 0.8640
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.006G170300
[exp]
12.72 0.8533
AT2G38830 Ubiquitin-conjugating enzyme/R... Potri.002G046200
[exp]
13.71 0.8554
AT3G03280 unknown protein Potri.017G121200
[exp]
23.51 0.8463
AT1G19900 glyoxal oxidase-related protei... Potri.005G235500
[exp]
33.31 0.8465
AT1G29280 WRKY ATWRKY65, WRKY6... WRKY DNA-binding protein 65 (.... Potri.004G060900
[exp]
50.67 0.8165
AT1G68450 PDE337 PIGMENT DEFECTIVE 337, VQ moti... Potri.010G123700
[exp]
56.39 0.8128
AT5G25120 CYP71B11 "ytochrome p450, family 71, su... Potri.001G364600
[exp]
63.68 0.7968

Potri.002G118200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.