Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) AT1G05380 306 / 1e-88 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G36740 284 / 2e-80 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT3G14980 279 / 6e-79 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT4G14920 278 / 8e-79 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G63900 251 / 3e-73 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G36670 253 / 5e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37520 182 / 2e-47 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 174 / 1e-44 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 171 / 2e-43 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072600 [exp] 512 / 1e-163 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.010G087700 [exp] 298 / 8e-85 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 295 / 1e-83 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 289 / 6e-82 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 272 / 2e-80 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.002G051400 [exp] 272 / 4e-76 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 272 / 6e-76 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.006G083600 [exp] 192 / 2e-50 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 181 / 9e-47 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007741 [exp] 457 / 8e-148 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 452 / 9e-146 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10015266 [exp] 464 / 5e-143 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 398 / 3e-119 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10012522 [exp] 341 / 1e-105 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10025386 [exp] 316 / 6e-94 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10006110 [exp] 294 / 2e-83 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 284 / 3e-80 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 266 / 8e-74 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 256 / 1e-70 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain CL0049 [poplar] [flax] PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G118600.1 pacid=42777870 polypeptide=Potri.002G118600.1.p locus=Potri.002G118600 ID=Potri.002G118600.1.v4.1 annot-version=v4.1 ATGGCGGTGTTTAAGGAATTTAGAGTCACAATGCAGTTTAGGGTAAACCAAAAGGTTGAGATTAGAACCCAAGAAAGTGGTTTTCATGGTTCATGGATGA GAGCCACAGTTATTGATTCAAGCAAGCAATCTTATCACGTCCAATACGACAATTTGCTTCAACTGGAAGATGGTGCTGAAAAACTAGTGGAAGTTGTTAC CTTGACACCCACTAATACTGTTTCTTCTTCCCGGTTAAGGCCATTGCCACCAATGGTCAGTTTTGGGGTCTTTGATTTGTCTTATGGGCTGTGTGTGGAT GTTTACGATAAGGGATCTTGGTTGGAAGGTGTGATCTTTGATCATGAAGATGGTTCTAATGAGAGGATTGTTCTTTTGCTAGAATCCGGGGGAGAGAGAA AGATAAAGATTGAGTCTTTAAGGATTGGTCAAGAATGGGATGTGTTTACTGGGGTTTGGAAGCTTAAGGGAACATGGCCATTAATTGGGTTATTCGAGGG GTGTGAGAAAGATCAATCGGTTCTTTACGGGACTCGTATGATTGTTGATTCAATTCCTAGGGAAAATCCATTGATTGATCATGAGGGTGGTGGGATGGTA ATGAATGCAGTTGATTCCGATGATGTGGTTTTGGCAAACTCTGATAAGGACTCATGCAATAGGGTTGATATGGTGACTGATTGTAAGAGAATGGACGTTG TGGATTCTGATGGGGTTTTCAAAGATGGTTCTCAGGTTGTTATTACTAGTAAGAATCCGGCTAATGGGGACTGTATGTCGATCGGTGATTCTAATGGTGA AGGATTATTGGGTGCTAATGGGAAAAGGCTTGGAAAGAGAGGGAGAAAGTCAGCGCAGAAAGGCTTTGGGTGGGTTCCTGCTGGTCCTGACCTGTTACCT GCAGCTGAGTTCTGTCCTGGTGCCATCACAAGATATGCTTCTCATGGCAATCAACGGCCAACGGAACCTCTTTTGATAGATGTTAGGAAGCACCTTGCAT ATGTTGGCTGGAAAATTGAGTGCAAGAAATATGGCAGCGCATACAAATTTCGGTATACCTCACCAGATGGTAGCAAGACTTACTTTTCTCTCCGTCTGCT TTGTCTGGATATGAGGGATCCCACAATTGAGAACTCTTCTCTAATTTCCCAAGACTTGATCAACGATGTTAAGAAGTCCTCTGGCATAGACTGTCCTAGA AAGAGTAAGAGAACGGATGAGTTCTCGCAGTTTCCATCTAGAGCTGATTCTCAGGGAAGAAATGATGATGTTGGGTTATTAGGTGATTCTGAGCTGAGGC ACCAGCAGGATCAAAATGCCAGTCTTCCGAGGCCAAGGAGAGAAAAGACAATTGAAACTCTAAAGAAGCTTAGAGATTATCAGAAAAGTCATCAAGAACA AAATGCCAGCCCTCTAAAGCAAAGGAGAGGAAAGGTAATTGAAACTCTAGAGAAACCAAGGGATGGTCAGAAACGACAATCAAGCAGAACAGCAATGCAG GGAGTGACTCCAAGGTCCTCAAAGTGCAAACCTCGTTGTGCCTTATCTTGGATGATCGACAACAATTTGGTGTCGCCGGGGGAAAAAGTGAGTTATCGTG GAAGCAAGGGCCCCGGTGAATTGACAAGAGGGAGGATAACTCGTGAGGGGATTGAATGCAACTGTTGCCAGAAGATTTTTACTCTCACTGGCTTTGAATC TCATGCTGGAAGCACCAATCACAGACCAGCTGCTAATATAATATTGGAAGATGGCAGGAGCTTGTTAGATTGCCAAAGAAAGAAGAAACCCCGGATTAAG ATGCAAAGGGTCACGAGAGAGGCTAAGTGGAAAGGGAGACAAAATCAACATCAAGGTGAGACTGACTACATTTGTTCTGTTTGTCATGATGGAGGCGATT TAATTGTATGCGATCATTGCCCATCTACATTCCACAAAAATTGCGTTGGTTTGGAGGATATTCCAGAAGGGGAATGGTTCTGCCCACCTTGCTGTTGTGG TATCTGTGGTGAAAACAAATTCAAGTACAATGTTCAGGAACCTAAAGATTCTCGTCTTCTCAGTTGCGATCAATGTGAGCGTAAATATCACATTGGATGC TTAAGAAACAAAGGAGTAGTTAAGTTGAAAAGGAAAGATCCCAAGGATAGTTGGTTTTGCAGCAACAAGTGTGAAGATATATTCATAGGCCTTCAAACGC TGTTGGGAAAATCAGTTGTAGTAGGTCCAGATAATCTCACTTGGACATTGTGGAAGTTTATGGATTCTGATAGCTGTGATGTTGAGGCCCCGACAGGAAA GCACAGCAAACTTGATCTTGCTGTTGAGGTGATTCATGAATGCTTTGAACCAGCGACTGAAACTTACACAGGAAGAGACATTGCCGAAGATGTTATTTTT AGCAGAGAATGTAACCTAAATCGCTTGAACTTTAGGGGATTCTACACAGTGCTTCTTGAAAGAAACGATGAGCTAATAGCTGTGGCTAATGTGAGGGTTT TCGGAGATAAGGTGGCAGAGATTCCTCTTGTTGGTACCAGGTTTCTGTTCCGTAGGCTTGGAATGTGTAAGATATTGATGGATGAGCTCGAAAAGCAACT CATGAATTTGGGAGTGGAGAGGTTAATGCTGCCTGCTGTTCCTAGTGTGCTATACACCTGGATAAATGGTTTTGGGTTCTCAAAGCTGACAGATGCCGAG AAGATGCAATATTTAGACCACACTTTTCTGGATTTTCCAGGCACCATCAAGTGCCAGAAAGTGTTATTGTAG
AA sequence Show only first row Show all	>Potri.002G118600.1 pacid=42777870 polypeptide=Potri.002G118600.1.p locus=Potri.002G118600 ID=Potri.002G118600.1.v4.1 annot-version=v4.1 MAVFKEFRVTMQFRVNQKVEIRTQESGFHGSWMRATVIDSSKQSYHVQYDNLLQLEDGAEKLVEVVTLTPTNTVSSSRLRPLPPMVSFGVFDLSYGLCVD VYDKGSWLEGVIFDHEDGSNERIVLLLESGGERKIKIESLRIGQEWDVFTGVWKLKGTWPLIGLFEGCEKDQSVLYGTRMIVDSIPRENPLIDHEGGGMV MNAVDSDDVVLANSDKDSCNRVDMVTDCKRMDVVDSDGVFKDGSQVVITSKNPANGDCMSIGDSNGEGLLGANGKRLGKRGRKSAQKGFGWVPAGPDLLP AAEFCPGAITRYASHGNQRPTEPLLIDVRKHLAYVGWKIECKKYGSAYKFRYTSPDGSKTYFSLRLLCLDMRDPTIENSSLISQDLINDVKKSSGIDCPR KSKRTDEFSQFPSRADSQGRNDDVGLLGDSELRHQQDQNASLPRPRREKTIETLKKLRDYQKSHQEQNASPLKQRRGKVIETLEKPRDGQKRQSSRTAMQ GVTPRSSKCKPRCALSWMIDNNLVSPGEKVSYRGSKGPGELTRGRITREGIECNCCQKIFTLTGFESHAGSTNHRPAANIILEDGRSLLDCQRKKKPRIK MQRVTREAKWKGRQNQHQGETDYICSVCHDGGDLIVCDHCPSTFHKNCVGLEDIPEGEWFCPPCCCGICGENKFKYNVQEPKDSRLLSCDQCERKYHIGC LRNKGVVKLKRKDPKDSWFCSNKCEDIFIGLQTLLGKSVVVGPDNLTWTLWKFMDSDSCDVEAPTGKHSKLDLAVEVIHECFEPATETYTGRDIAEDVIF SRECNLNRLNFRGFYTVLLERNDELIAVANVRVFGDKVAEIPLVGTRFLFRRLGMCKILMDELEKQLMNLGVERLMLPAVPSVLYTWINGFGFSKLTDAE KMQYLDHTFLDFPGTIKCQKVLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58610			PHD finger transcription facto...		Potri.002G118600 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	5.74	0.7549
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.009G062100 [exp]	7.41	0.7024
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.005G003200 [exp]	8.12	0.7184
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Potri.009G059200 [exp]	9.59	0.7357	Pt-TWD1.1
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.015G083800 [exp]	10.09	0.6707
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.009G119200 [exp]	16.73	0.6789
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.001G151100 [exp]	23.17	0.7445
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.019G125300 [exp]	24.39	0.6031
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.012G024200 [exp]	28.19	0.7194
AT1G50870			F-box and associated interacti...		Potri.019G062900 [exp]	35.87	0.6882

Compare expression of checked genes

Potri.002G118600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.