Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27760 539 / 0 SAT32, ATSAT32 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016800 [exp] 741 / 0 AT1G27760 563 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Potri.009G088700 [exp] 203 / 1e-60 AT1G27760 198 / 9e-59 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007734 [exp] 588 / 0 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018689 [exp] 585 / 0 AT1G27760 565 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Lus10025970 [exp] 92 / 1e-19 AT1G27760 113 / 3e-27 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04836 [poplar] [flax] IFRD_C Interferon-related protein conserved region CL0020 [poplar] [flax] TPR PF05004 [poplar] [flax] IFRD Interferon-related developmental regulator (IFRD)
Representative CDS sequence Show only first row Show all	>Potri.002G119100.1 pacid=42779293 polypeptide=Potri.002G119100.1.p locus=Potri.002G119100 ID=Potri.002G119100.1.v4.1 annot-version=v4.1 ATGGGGAAGCGTAATAATCAGCGTAAAAATGTTGCGATGTTGGATAGTAGTGATGATAATAGTAGCGTGAGTTCATCATCAACTGGCCGTTCTGATCTTA TGTCGGTGTCTGGGAGCGACGATGTTCAAGTTGATAAAGATAGTTTACTAGAACAAGCTCTAGATGCTTTGTATGAGAAGAGGGGTTCGACAAGAGAGAA AGCTTTGGCAGCGATTATTGAGGCTTTCAATACCAATTTGCAGCTCCAATTTGTTGAGAAAAAATTTGCTACTTTATTGCATCAATGTCTTAATTCCATT AAAAAGGGGTCTAGCAAAGAGATTGCTCTGGCATGCCATGCCATTGGATTGTTGGCTCTGACTGTTGGTTCTGGGGATAATGCACGTGAAATTTTGGAAG AATCAGTAGCTCCTATTTCCCAAGCTCTTAAATCTCAGTCTGATTCCTTGAAGACTGAATCGTTACTGGAGTGTTTGGCTGTTGTGACATTTGTTGGTGC AAAGGAAACTGAGGAAACAGAACGATCAATGCAAATCATGTGGCAATTGCTTCATCCTAAACTAGGTTCTAATGTAGTTGCTGTAAAAACTCCTGCCGTT GTAGTAACAGCAGTTGTGTCTGCTTGGGCATTTCTCTTGACAACCATGGATGGATGCTCCCTTAACTCCAAAGATTGGCAAGAGTCCATTTCTTATCTCT CTACCCTGCTAGATAAGGATGATAGATCTGTACGCATCTCTGCTGGTGAAGCACTAGCTTTAATTTTTGAGACCGGAAGTATAGAAAAGTTTGCTGCTGA AAATAAAACACCCCCTGATGGCTCAGTTTTAGAAGGAAATAAGTCTTGTGAAGGATATACACGTATACTAGGTCTGAAATCAAAAATCCTAAATCAAGTG AGAAGTCTTTCTGCCGAGGCTGGCGGAAAAGGTTCCACTAAGAAGGATCTTAACAGCCAGAGGAACTTGTTCAAGGATGTTTTGGAGTTTCTGGAGGATG GCAACACTCCTGAAATCTCAATGAAGATTGGTGGAGATTCACTACAAACATCAACATGGTCTGAGCTTATACAGTTGAACTTCTTGAAGCATTTTCTTGG TGGTGGGTTTGTTAAGCACATGCAGGATAATGAATTCCTTCATGATGTCTTTGGGTTCACGCCAAAGAGAAAGCATATCCTTGGTGTTGAACATCAAATG TCAAGTGGTGAAAAGAGGATGTTCCGGTCTCCAAACTCAGTCCTCAATAAAGCCAGGACCCAGTTTCTGAACAAGCAGCGGATGCTATCTAAGGATAGAA ACGTTGGGCATTTTGCTGTTGGTATGGGCGATGAAGATATGTGA
AA sequence Show only first row Show all	>Potri.002G119100.1 pacid=42779293 polypeptide=Potri.002G119100.1.p locus=Potri.002G119100 ID=Potri.002G119100.1.v4.1 annot-version=v4.1 MGKRNNQRKNVAMLDSSDDNSSVSSSSTGRSDLMSVSGSDDVQVDKDSLLEQALDALYEKRGSTREKALAAIIEAFNTNLQLQFVEKKFATLLHQCLNSI KKGSSKEIALACHAIGLLALTVGSGDNAREILEESVAPISQALKSQSDSLKTESLLECLAVVTFVGAKETEETERSMQIMWQLLHPKLGSNVVAVKTPAV VVTAVVSAWAFLLTTMDGCSLNSKDWQESISYLSTLLDKDDRSVRISAGEALALIFETGSIEKFAAENKTPPDGSVLEGNKSCEGYTRILGLKSKILNQV RSLSAEAGGKGSTKKDLNSQRNLFKDVLEFLEDGNTPEISMKIGGDSLQTSTWSELIQLNFLKHFLGGGFVKHMQDNEFLHDVFGFTPKRKHILGVEHQM SSGEKRMFRSPNSVLNKARTQFLNKQRMLSKDRNVGHFAVGMGDEDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Potri.002G119100 [exp]	0	1
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.014G087000 [exp]	4.69	0.7674
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Potri.014G016800 [exp]	11.83	0.7563
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Potri.010G251800 [exp]	11.95	0.7865
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Potri.001G372100 [exp]	35.67	0.6874
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054600 [exp]	56.07	0.6570	HSP70.4
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067600 [exp]	58.96	0.6338
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Potri.016G109400 [exp]	60.67	0.7289
AT2G38640			Protein of unknown function (D...		Potri.006G113400 [exp]	67.82	0.6979
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.015G027300 [exp]	75.49	0.7134
AT3G55580			Regulator of chromosome conden...		Potri.008G059800 [exp]	78.20	0.6043

Compare expression of checked genes

Potri.002G119100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.