Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33880 186 / 3e-55 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT1G27740 179 / 8e-54 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT2G14760 179 / 6e-53 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G43175 159 / 1e-46 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G66470 99 / 3e-23 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G37800 97 / 1e-22 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT2G24260 91 / 5e-20 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 88 / 2e-19 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 85 / 2e-18 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT3G21330 77 / 3e-15 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017100 [exp] 547 / 0 AT2G14760 179 / 2e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G089000 [exp] 251 / 5e-80 AT2G14760 173 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.001G294300 [exp] 237 / 8e-75 AT4G33880 164 / 2e-47 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.004G088900 [exp] 99 / 7e-23 AT5G37800 199 / 7e-62 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.017G126800 [exp] 99 / 8e-23 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.018G109500 [exp] 87 / 1e-18 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 87 / 2e-18 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 86 / 4e-18 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.006G102600 [exp] 79 / 3e-17 AT5G01310 112 / 4e-29 APRATAXIN-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001068 [exp] 192 / 1e-57 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 184 / 1e-54 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10017634 [exp] 96 / 4e-22 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10033592 [exp] 93 / 3e-21 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10021846 [exp] 88 / 6e-19 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10033488 [exp] 79 / 1e-16 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014726 [exp] 78 / 1e-16 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 80 / 2e-16 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 79 / 2e-16 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 79 / 4e-16 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G119200.2 pacid=42778637 polypeptide=Potri.002G119200.2.p locus=Potri.002G119200 ID=Potri.002G119200.2.v4.1 annot-version=v4.1 ATGTCGCAGTCATCTCCACGATCAGGCCGTCCTTTGGCCGCGTTTTGTTTATTCTCCAACAGAATTCTTCCTCTTTATTATATTCAAGATGATAGAAGAC AGCCCCACGTTCTGACATTTTCAACTTCCAAGTGCAAAATGAATACGCAGGCTATGGAAGCCTTTCGTGATGGAGAATTATGGAACTTCAGCAGAATGTT CTCCATGGAAGAGCCTGATTGCACCCCAGAATTACTTGGTCAGTGCTCTTTTCTTCAGGATACTGATGAAGGATTGCATTTTACAATCCCATCAGCTTTC TTCCCTGCTCCTGAATCCGACGCGAGCATGGCTGAGGACGAGAGTTTGTTTTATTCTTGGCATACTCCCAACCCCAATTTGCATTTTGATTCTCAAGAAA GTAGTAATAACAGTAATTCTAGCAGTAGTGTATTTCTTCCCTATTCCAGCCATGAATCCTACTTCTTCAATGATTCTAATCCCATTCAAGCTACGAACAA TAACTCTATGTCCATGGATATTATGGATGAGGAAAATATTGGCTTGTTTATGCCACTTTTTCCTGAAATTGCAATGGCAGAAACTGCCTGTATGAATGGA GATATGAGCGGTGACAAAACAGGAGATTTAGATGATAATCTGAAGCCAGCAGCTAATGATGTTCTGGCCAAGGGATTGCAGCTCAAAAGGAAGCTTGATG TTCCAGAACCAATAGCCAACACATTGGACGACATGAAGAAAAAAGCCCGGGTTACAAGAAATGTGCAAAAGACTAGGAAGGTTGGACAGTCAAAAAAAAA TCAGAAGAACGCACCAGATATTAGCCATGATGAAGAAGAGAGTAATGCTGGACCAGACGGACAAAGTTCCAGCAGTTGTAGTTCAGAAGAGGACAATGCC TCTCAGGATTCTGATTCCAAGGTTTCTGGAGTTCTCAATTCCAATGGAAAAACAAGAGCTACTAGGGGAGCTGCCACAGACCCCCAGAGCCTTTATGCAA GGAAAAGAAGGGAGAGGATAAACGAGAGACTGAAAATCTTGCAGAATCTTGTCCCTAACGGAACCAAGGTTGATATCAGCACGATGCTAGAAGAGGCAGT CCATTACGTAAACTTTTTGCAGCTTCAAATCAAGCTTTTGAGCTCGGATGATCTATGGATGTATGCACCTCTGGCTTACAATGGAATAGATATTGGACTC AACCAGAAGCTCTCTATGTTTCTATGA
AA sequence Show only first row Show all	>Potri.002G119200.2 pacid=42778637 polypeptide=Potri.002G119200.2.p locus=Potri.002G119200 ID=Potri.002G119200.2.v4.1 annot-version=v4.1 MSQSSPRSGRPLAAFCLFSNRILPLYYIQDDRRQPHVLTFSTSKCKMNTQAMEAFRDGELWNFSRMFSMEEPDCTPELLGQCSFLQDTDEGLHFTIPSAF FPAPESDASMAEDESLFYSWHTPNPNLHFDSQESSNNSNSSSSVFLPYSSHESYFFNDSNPIQATNNNSMSMDIMDEENIGLFMPLFPEIAMAETACMNG DMSGDKTGDLDDNLKPAANDVLAKGLQLKRKLDVPEPIANTLDDMKKKARVTRNVQKTRKVGQSKKNQKNAPDISHDEEESNAGPDGQSSSSCSSEEDNA SQDSDSKVSGVLNSNGKTRATRGAATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVHYVNFLQLQIKLLSSDDLWMYAPLAYNGIDIGL NQKLSMFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Potri.002G119200 [exp]	0	1
AT1G30870			Peroxidase superfamily protein...		Potri.003G156100 [exp]	1.00	0.9218
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134000 [exp]	1.41	0.9022
					Potri.014G042550 [exp]	4.89	0.7728
AT5G01680		ATCHX26	cation/H+ exchanger 26, ARABID...		Potri.016G127800 [exp]	7.93	0.7389	ATCHX27.1
AT5G36130			Cytochrome P450 superfamily pr...		Potri.003G222001 [exp]	13.03	0.7810
AT5G63660		LCR74, PDF2.5	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Potri.004G138100 [exp]	17.60	0.8028
AT5G22410		RHS18	root hair specific 18 (.1)		Potri.001G218500 [exp]	20.14	0.7981
AT3G59850			Pectin lyase-like superfamily ...		Potri.007G144500 [exp]	24.67	0.7324
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Potri.008G072000 [exp]	30.46	0.7897
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107600 [exp]	31.30	0.7283

Compare expression of checked genes

Potri.002G119200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.