Plant FIBer expression Database

Potri.002G119250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G119250.1 pacid=42778316 polypeptide=Potri.002G119250.1.p locus=Potri.002G119250 ID=Potri.002G119250.1.v4.1 annot-version=v4.1
ATGTTTAATTGCAAATTTGCAATCAAATATTTTGTTTTGTTTTTTCTGATCCCAACCGAGCTTGCAACCACACGTACGATTACGACCCAAGATTCATTTT
TGCAACAAATTTGTGGCTGCAGAAGTACTAAGGTCACGGATTTAGATATGGACGCAAAAAAAAATTACAGCCCGATCACACGATCTCTCCTTCTCTCTCA
CAATCTCCAGCCACCATACCCACCTCAAGCAGCCACTTCTCCTCAAATGTTATTGCCTCCATCACGCGCTTGA
AA sequence
>Potri.002G119250.1 pacid=42778316 polypeptide=Potri.002G119250.1.p locus=Potri.002G119250 ID=Potri.002G119250.1.v4.1 annot-version=v4.1
MFNCKFAIKYFVLFFLIPTELATTRTITTQDSFLQQICGCRSTKVTDLDMDAKKNYSPITRSLLLSHNLQPPYPPQAATSPQMLLPPSRA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G119250
[exp]
0 1
AT3G18360 VQ motif-containing protein (.... Potri.015G046600
[exp]
9.84 0.8494
AT5G41330 BTB/POZ domain with WD40/YVTN ... Potri.001G102300
[exp]
15.42 0.8472
AT1G07710 Ankyrin repeat family protein ... Potri.016G080700
[exp]
17.91 0.8467
AT5G49620 MYB ATMYB78 myb domain protein 78 (.1.2) Potri.002G191800
[exp]
24.39 0.8336
AT1G80840 WRKY ATWRKY40, WRKY4... WRKY DNA-binding protein 40 (.... Potri.003G182200
[exp]
25.69 0.8337 WRKY40.2
AT3G29000 Calcium-binding EF-hand family... Potri.008G087900
[exp]
31.32 0.8276
AT4G33050 EDA39 embryo sac development arrest ... Potri.006G226500
[exp]
31.36 0.8328
AT1G17420 ATLOX3, LOX3 Arabidopsis thaliana lipoxygen... Potri.001G167700
[exp]
32.07 0.8327 LOX3.1
AT1G72450 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmo... Potri.003G068900
[exp]
35.88 0.8277
AT5G42650 CYP74A, AOS, DD... DELAYED DEHISCENCE 2, CYTOCHRO... Potri.002G130700
[exp]
41.15 0.8258 AOS.7

Potri.002G119250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.