Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27730 187 / 4e-59 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT3G19580 155 / 3e-46 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT5G43170 150 / 2e-45 C2H2ZnF AZF3 zinc-finger protein 3 (.1) AT5G04340 145 / 8e-43 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) AT3G49930 141 / 2e-41 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G67450 141 / 3e-41 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT1G49900 97 / 1e-22 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT2G28200 91 / 1e-21 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G02040 87 / 8e-20 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G45120 81 / 1e-17 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017300 [exp] 360 / 6e-127 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.001G295500 [exp] 194 / 5e-62 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.009G089400 [exp] 172 / 4e-53 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.014G066200 [exp] 90 / 2e-20 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 87 / 1e-19 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.002G143800 [exp] 84 / 1e-18 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 80 / 3e-17 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.006G121600 [exp] 78 / 5e-17 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 79 / 6e-17 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032848 [exp] 184 / 2e-57 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1) Lus10004316 [exp] 169 / 1e-51 AT5G04340 134 / 3e-38 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) Lus10033798 [exp] 167 / 4e-51 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10014631 [exp] 149 / 8e-44 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10018696 [exp] 132 / 2e-38 AT3G49930 130 / 6e-38 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10042872 [exp] 101 / 1e-24 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10028173 [exp] 101 / 2e-24 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10024763 [exp] 85 / 1e-18 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 83 / 5e-18 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 77 / 1e-16 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.002G119300.1 pacid=42779755 polypeptide=Potri.002G119300.1.p locus=Potri.002G119300 ID=Potri.002G119300.1.v4.1 annot-version=v4.1 ATGGCACTAGAAGCCTTAAACTCTCCAACTACTGCAACCCCATCGTTTCAGTTTGAGGAGTCAAGCACCCACTGCGTGGTTGAGCCATGGGCAAAGCGCA AGCGCTCTAAGCGTCCACGTCTTGACCACCAACCAACCGAAGAAGAGTATCTCGCTCTCTGTCTTGTCATGCTAGCTCGCGGTTCTACAAATCTCCCAAT CCCCGCCTTAGACGGCCACCACAAAAAATCCCTCGCCCCGCCAACTGCATCCACGTCATCGGAGCAAAAAATAAGTTACAAGTGTTCCGTATGCAACAAG GAGTTTCCTTCATACCAAGCCCTAGGCGGGCACAAGGCAAGTCACAGAAAACTCGCTGGGGGCGGCGAAGACCAAACTACTTCCTGTACAACTACTTCTG CCACGACAACACCCGTGTCTAACGGAAGTGGCAGGGTTCATGAGTGCTCAATCTGCCACAGAACTTTTCCCACCGGACAAGCCCTGGGTGGTCACAAGAG GTGTCACTACGAAGGCATCATAGGAGGCGCCGAAAAGAGTGGTGTGACTTCAACTTCTGAAGGAGCTGGATCTACAAACACTCGCACTCATAGCCACAAT CACAGTCACCATGACTTTGACCTTAATGTTCCAGCCTTGCCAGAGTTCTCTTCAGATTTCTTTGTATCCGGTGATGATGAAGTTATGAGCCCTCTACCGG CAGCAAAAAGGATTCGTATTTTGATGGCACCCAGAATTGAAGTTTCTCAAGCTCAGTAG
AA sequence Show only first row Show all	>Potri.002G119300.1 pacid=42779755 polypeptide=Potri.002G119300.1.p locus=Potri.002G119300 ID=Potri.002G119300.1.v4.1 annot-version=v4.1 MALEALNSPTTATPSFQFEESSTHCVVEPWAKRKRSKRPRLDHQPTEEEYLALCLVMLARGSTNLPIPALDGHHKKSLAPPTASTSSEQKISYKCSVCNK EFPSYQALGGHKASHRKLAGGGEDQTTSCTTTSATTTPVSNGSGRVHECSICHRTFPTGQALGGHKRCHYEGIIGGAEKSGVTSTSEGAGSTNTRTHSHN HSHHDFDLNVPALPEFSSDFFVSGDDEVMSPLPAAKRIRILMAPRIEVSQAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.002G119300 [exp]	0	1
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G150800 [exp]	1.00	0.9646	ERF5
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Potri.001G397200 [exp]	1.73	0.9507
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.008G069400 [exp]	2.00	0.9566
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.014G017300 [exp]	2.82	0.9335	SCOF.2
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Potri.005G139300 [exp]	3.46	0.9501
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.007G113000 [exp]	3.87	0.9467
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.010G187900 [exp]	4.58	0.9354
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138800 [exp]	4.69	0.9299	DREB47
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.017G045100 [exp]	5.47	0.9452
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Potri.019G073300 [exp]	6.92	0.9036

Compare expression of checked genes

Potri.002G119300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.