Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26680 449 / 6e-160 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017900 [exp] 555 / 0 AT2G26680 457 / 2e-163 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005721 [exp] 484 / 1e-173 AT2G26680 444 / 6e-158 unknown protein Lus10019418 [exp] 475 / 3e-170 AT2G26680 460 / 4e-164 unknown protein Lus10043275 [exp] 473 / 3e-168 AT2G26680 457 / 6e-162 unknown protein Lus10030089 [exp] 429 / 1e-151 AT2G26680 400 / 4e-140 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05050 [poplar] [flax] Methyltransf_21 Methyltransferase FkbM domain
Representative CDS sequence Show only first row Show all	>Potri.002G119800.1 pacid=42778388 polypeptide=Potri.002G119800.1.p locus=Potri.002G119800 ID=Potri.002G119800.1.v4.1 annot-version=v4.1 ATGGCAAATGCCTGGAAAAGAGAAAACAACAAACAGCCTAAACTCCTATCTCCCATCCTTCTCATCCTCTCACTCTCTCTCCTTCTCCTCCTCTTTCTCT TCTTCTTCTCTGCTCGGTCCCCGTCGAATCCTCCTAACTCCACACTATTTGTAACCCAAGTTTACCCAATCCCTTCTTTTAATTGCTTAGAATCTCCACA AGCTCACCCTGTGATTGCCAACATTGTGGAAAACCTCAAATACCCCTTTCTCTACTCTCTCTCAGATTTTGGGTCTTTGCCTGACAAGCCCCACAAGAAC ATTGTGAGGCTTCTGAAAGGAAAGCCTTTCAGGAAGCCAGATATTTCTGCCACGATTCAGCAGCTTCTTGAAGGGATGAAAGGAAGAAATGGGTTGGTGG TGGATGTTGGGGCTAACGTGGGAATGGCGAGTTTTGCAGCCGCGGTAATGGGTTTTAAAGTGCTGGCTTTCGAGCCAGTGATTGATAACCTTAAGAGGAT TTGTGATGGGATTTGGTTTAATCGTGTTGCGGACCTGGTTACTGTTTTCGAGGCTGCTGTCTCTGATCGGATTGGGAATATTACTTTTTATAAGCTGGTA GGTCGGCTTGACAATAGTGCTGTCTCTGCCAATGGTGCAAAGTTGGCGTTCAAGTCCAACGAAGAAATAGCCTTTCAAGTAAGGACCATTCCCCTTGATG AGCTAATTCCAAATTCAGAACCTGTGTTGCTTCTCAAAATTGATGTCCAAGGATGGGAATATCATGTGTTGAAAGGGGCCGTAAAATTATTGTCAAGAAA GAAAGATGCTGCTCCCTACCTAATCTACGAGGAGGATGAACGGTTGCTGCAAGCGAGCAACAGTAGTGCCAAAGAGATCCGGGATTTCCTCCATGGTGTT GGATATAGCCATTGTGTCCAGCATGGTACAGATGCCCATTGCACCAAGGGTTAA
AA sequence Show only first row Show all	>Potri.002G119800.1 pacid=42778388 polypeptide=Potri.002G119800.1.p locus=Potri.002G119800 ID=Potri.002G119800.1.v4.1 annot-version=v4.1 MANAWKRENNKQPKLLSPILLILSLSLLLLLFLFFFSARSPSNPPNSTLFVTQVYPIPSFNCLESPQAHPVIANIVENLKYPFLYSLSDFGSLPDKPHKN IVRLLKGKPFRKPDISATIQQLLEGMKGRNGLVVDVGANVGMASFAAAVMGFKVLAFEPVIDNLKRICDGIWFNRVADLVTVFEAAVSDRIGNITFYKLV GRLDNSAVSANGAKLAFKSNEEIAFQVRTIPLDELIPNSEPVLLLKIDVQGWEYHVLKGAVKLLSRKKDAAPYLIYEEDERLLQASNSSAKEIRDFLHGV GYSHCVQHGTDAHCTKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26680			unknown protein		Potri.002G119800 [exp]	0	1
AT4G34660			SH3 domain-containing protein ...		Potri.004G161300 [exp]	8.71	0.8272
AT5G26667		PYR6	P-loop containing nucleoside t...		Potri.002G134600 [exp]	13.03	0.8556
AT5G21070			unknown protein		Potri.009G158800 [exp]	25.92	0.8243
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Potri.004G189900 [exp]	27.56	0.7805	AXS1.2
AT4G25600			Oxoglutarate/iron-dependent ox...		Potri.012G142800 [exp]	28.37	0.8182
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.013G006250 [exp]	40.62	0.8169
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Potri.002G071600 [exp]	49.19	0.8054	Pt-VPS45.2
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	52.47	0.8009
AT1G48160			signal recognition particle 19...		Potri.012G045500 [exp]	55.85	0.7972	SRP19.1
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	62.86	0.7988

Compare expression of checked genes

Potri.002G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.