Plant FIBer expression Database

Potri.002G119900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43130 635 / 0 TAF4, TAF4B TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
AT1G27720 407 / 2e-129 TAF4b TBP-associated factor 4B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G018000
[exp]
1409 / 0 AT5G43130 605 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007763
[exp]
776 / 0 AT5G43130 576 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10018701
[exp]
773 / 0 AT5G43130 596 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10033265
[exp]
712 / 0 AT5G43130 404 / 1e-127 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10008297
[exp]
708 / 0 AT5G43130 448 / 3e-144 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10038047
[exp]
152 / 4e-41 AT5G43130 145 / 1e-39 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10035390
[exp]
46 / 0.0001 AT2G35510 352 / 5e-114 similar to RCD one 1 (.1)
Lus10030991
[exp]
44 / 0.0007 AT1G32230 376 / 2e-123 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0012 Histone PF05236 TAF4 Transcription initiation factor TFIID component TAF4 family
CL0012 PF12174 RST RCD1-SRO-TAF4 (RST) plant domain
Representative CDS sequence
>Potri.002G119900.1 pacid=42780076 polypeptide=Potri.002G119900.1.p locus=Potri.002G119900 ID=Potri.002G119900.1.v4.1 annot-version=v4.1
ATGGACCCTAACATAATGAAGCTTCTTGAAGAAGACGAGGACGAAACCATGCATTCCGGTGCTGACGTGGAGGCTTTTCAAGCTGCCTTAAATCGGGACA
TCGGGGGTGATGTCTCCACCTCTCAGCCGTCTGATTCGAGTTCGGTTTTGTCCCACGAAAACAATCAAAGTTCCAGTCAACAATTTCCAAATTGGCCAAC
TGTGGGGCAAAATGACAATGCCAGTAACACCGAAGAACTTGATGCAAAAAGTGTCGAACAACAACATCATCAGGAGCAGCAGTCATCTGCAATGGAGACA
AAGCAGCATGTACCTAATGCTGATAACCAACAACAAAAGGGGGATGTCCCGCAGGAACCAACCCACCCACCAGTGCTTCAGAAAAAATTCCAAGATGATA
TTAAACAAGAACTTGTGGAACAAGCTCCTGTCCAGACTCCTCAATCTATCGGGGCGCAGAGTTCTGAGCAAAATCCTACCCCAAAATCCGAGCCTGATAA
AATGCAAATTTCAGATGTTGATTCTCAATTTTTAAATTTTCAGAAGATAGGCAATCAGCAAACTGCAGGCACAGATCAGGCTGGTAACCAAAAGAATAGC
AAGCAGATACCCTTTGTATTATTGTTGCCTGCCTTGAAACCTCATCTTGATAAAGACAGAGAGATGCAGCTGCAAACTTTATTTAATAAACTGAGGAAAA
ATGAAATTGCGAAAGACCAATTTGTTAGACTTATGAGAAATATTGTTGGGGATCAAGTGCTCAGGTTGGCAGTTGCACAACTGCAATCACAGTCAGGTTC
CAACCAATCCCAGTTACAGTCTCAAGCTGGTCGCCAAAACAATGTGAGAATGCCTGCTGGAATCAGTGCTGCTCAATTTCCTGATCCACATCATTTTGTA
CTTCACCCAAGGGGATCTATTTCTTCAGAACCATCTCGTAATCCTCCGTCAGCAGTCCAATTGCAGACTGATTCAAGCATTGTCAATTCTCAGAAATCCA
AAACGGTAGAATGGCAGCCAGATTCTCTTGGAATGCAAGCTAGCCAGTTGCATTCTTCCAATACCAGTATTGTCAATCAAGAAAGGGAGCGATCTTCTAT
TTCAATGCAAGGGCAGAACAAACAGCCACAACATGTGCACTTTCCACCAACTTCCTTTCCAATGTATGGAAGCAGTGGTGGTAATTACAATCAATATCCT
GGGACCAAAGTTAGTACTTCAGGACCATCTGTGAAGCCACAACCCCATGATCAACAAACAAGGCAAATTTCACATCATCAGAACATGGGTGTGACACAAG
TAGGAGGGCCACCACATAACATGATAAGCACGCCGAAGTTTGAGAGGCAAAATTCTGCTAATGATCCTAGTAGAGTGCACAGTGGTTCTGTTTCCCATTA
TACAAACAAATCAGCTGTACAACAGAATTCAGTTCCTTGGCAAGCACCACCAAATAGAGAGCAAAGTCCTGCTCCATTCTCATCAGTGAATTATGTAAAA
CCGGGCTCTCTTGAACAGGCTGGTGAGCAGCAGAACAAACCCCAGTTGTTGAGCCCTCAAGTGCTGCCTCCTGCACCCGTTGAACAGGGAAATGCCATTT
CAGGAAATTTAAAGGATCAATCTTTAGACAAGCAATCTTCTAAAGTTGTTTTTTCAACATCCGGTGGTATGGTTCCTCCCAATTCTGTTTCCCCTTCAAT
TGCGACTCAACTGGACCCTAATGGCCAGGTAAGCTCGCGAAACCCATCTGTAGCTTCTCCTGCTGGAGTTAGTGCAAGAACACCTCCCAAAAAACATTCT
GTTGGCCAAAAGAAGCCATTTGAAGCACTTGGTTCATCGCCTCTTGCATCAAGTAAGAAGCAAAAGGTATCTGGGGCTTTTTCTGATCAAAGCATTGAAC
AACTCAATGATGTCACTGCTGTCAGTGGAGTTAATCTCAGGGAAGAGGAAGAACAACTATTTTCAGGGACAAAGGAGGACAGTCGAGTTTCAGAAGCATC
ACGGAGGGTTGTACAGGAAGAAGAAGAAAGGCTGATTTTGCAGAAAAAACCTTTGCAGAAAAAATTAGGAGAGATCATGGCCAAATGTGGTTTGAAGAAC
ATTGGCAATGATGTTGGGCGATGCTTGTCCTTGTGCGTGGAGGAAAGGATGCGTGGACTGATAAGTGACCTGATCAGGCTCTCAAAACAGCGTGTTGATG
CTGAGAAGCCAAGACACCAGACTCTAATTACTTCGGATGTTAGGCAACAGATAATGACAATGAACCGGAAAGCTCGGGAAGAATGGGAGAAAAGGCAGGC
TGAAGCAGAAAAGCTCCAAAAAGTTAACGATCCCGAGGGTGAAAATGGAGGTGAAGGTGACAAGGAGAAAGATGAAGGTCGCGTGAAGTCAGTGAAGGCT
AACAAAGAGGAGGATGATAAAATGAGGACAACAGCTGCTAATGTTGCTGCTCGAGCTGCTGTTGGGGGAGATGACATGTTGTCAAAATGGCAACTAATGG
CTGAACAAGCACGGCAGAAACGTGAAGTAGGGATGGAGGGGGCATCTAGTTCCCAGCCAGTTAATGATGTGAACCGCAATCCTCAATCACCATCTGGAAG
AAATGTGAAAGAAAATCTTGAAGCAGAAAAAAGGAGCCCTGCAGTTCCTTCTGCATCTGGAGCTGTTAGGAAATTTGGAAGGAATCAAGCAATTGTGCCT
CAAACGAAGGTGGTTCGTACTATTACTGTTAAGGATGTGATGGCGGTGCTGGAAAGGGAACCTCAGATGTCCAGATCTACTCTGATCTACCAACTGTACG
AGCGAATCAGGTCTGATGCTGCACCTGAATAA
AA sequence
>Potri.002G119900.1 pacid=42780076 polypeptide=Potri.002G119900.1.p locus=Potri.002G119900 ID=Potri.002G119900.1.v4.1 annot-version=v4.1
MDPNIMKLLEEDEDETMHSGADVEAFQAALNRDIGGDVSTSQPSDSSSVLSHENNQSSSQQFPNWPTVGQNDNASNTEELDAKSVEQQHHQEQQSSAMET
KQHVPNADNQQQKGDVPQEPTHPPVLQKKFQDDIKQELVEQAPVQTPQSIGAQSSEQNPTPKSEPDKMQISDVDSQFLNFQKIGNQQTAGTDQAGNQKNS
KQIPFVLLLPALKPHLDKDREMQLQTLFNKLRKNEIAKDQFVRLMRNIVGDQVLRLAVAQLQSQSGSNQSQLQSQAGRQNNVRMPAGISAAQFPDPHHFV
LHPRGSISSEPSRNPPSAVQLQTDSSIVNSQKSKTVEWQPDSLGMQASQLHSSNTSIVNQERERSSISMQGQNKQPQHVHFPPTSFPMYGSSGGNYNQYP
GTKVSTSGPSVKPQPHDQQTRQISHHQNMGVTQVGGPPHNMISTPKFERQNSANDPSRVHSGSVSHYTNKSAVQQNSVPWQAPPNREQSPAPFSSVNYVK
PGSLEQAGEQQNKPQLLSPQVLPPAPVEQGNAISGNLKDQSLDKQSSKVVFSTSGGMVPPNSVSPSIATQLDPNGQVSSRNPSVASPAGVSARTPPKKHS
VGQKKPFEALGSSPLASSKKQKVSGAFSDQSIEQLNDVTAVSGVNLREEEEQLFSGTKEDSRVSEASRRVVQEEEERLILQKKPLQKKLGEIMAKCGLKN
IGNDVGRCLSLCVEERMRGLISDLIRLSKQRVDAEKPRHQTLITSDVRQQIMTMNRKAREEWEKRQAEAEKLQKVNDPEGENGGEGDKEKDEGRVKSVKA
NKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREVGMEGASSSQPVNDVNRNPQSPSGRNVKENLEAEKRSPAVPSASGAVRKFGRNQAIVP
QTKVVRTITVKDVMAVLEREPQMSRSTLIYQLYERIRSDAAPE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43130 TAF4, TAF4B TBP-associated factor 4B, TBP-... Potri.002G119900
[exp]
0 1
AT4G35800 RNA_POL_II_LSRN... RNA polymerase II large subuni... Potri.005G107600
[exp]
4.24 0.8976 Pt-RPB1.1
AT4G02560 HD LD luminidependens, Homeodomain-l... Potri.014G132800
[exp]
6.16 0.8871 Pt-LD.2
AT5G15920 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structu... Potri.001G262600
[exp]
8.24 0.8856
AT5G23150 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP... Potri.005G092700
[exp]
9.00 0.8867
AT1G55540 EMB1011 Nuclear pore complex protein (... Potri.003G223400
[exp]
10.24 0.8841
AT3G19840 ATPRP40C pre-mRNA-processing protein 40... Potri.010G170400
[exp]
10.39 0.8724
AT4G01570 Tetratricopeptide repeat (TPR)... Potri.002G182900
[exp]
11.48 0.8827
AT5G07400 FHA forkhead-associated domain-con... Potri.012G111800
[exp]
11.48 0.8673
AT3G51950 C3HZnF Zinc finger (CCCH-type) family... Potri.003G204300
[exp]
12.12 0.8557
AT3G61690 nucleotidyltransferases (.1) Potri.012G000900
[exp]
12.48 0.8608

Potri.002G119900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.