Plant FIBer expression Database

Potri.002G120100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G23090 141 / 5e-46 Uncharacterised protein family SERF (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G018100
[exp]
151 / 5e-50 AT2G23090 139 / 5e-45 Uncharacterised protein family SERF (.1)
Potri.001G296600
[exp]
140 / 3e-45 AT2G23090 129 / 5e-41 Uncharacterised protein family SERF (.1)
Potri.009G090800
[exp]
126 / 4e-40 AT2G23090 118 / 7e-37 Uncharacterised protein family SERF (.1)
Potri.014G018400
[exp]
73 / 3e-19 AT2G23090 62 / 1e-14 Uncharacterised protein family SERF (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019287
[exp]
142 / 3e-46 AT2G23090 134 / 5e-43 Uncharacterised protein family SERF (.1)
Lus10011535
[exp]
141 / 1e-45 AT2G23090 132 / 2e-42 Uncharacterised protein family SERF (.1)
Lus10014734
[exp]
60 / 6e-13 AT2G23090 54 / 1e-10 Uncharacterised protein family SERF (.1)
Lus10002728
[exp]
62 / 1e-12 AT2G24990 681 / 0.0 Serine/threonine-protein kinase Rio1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04419 4F5 4F5 protein related disordered region
CL0361 C2H2-zf PF12907 zf-met2 Zinc-binding
Representative CDS sequence
>Potri.002G120100.1 pacid=42778975 polypeptide=Potri.002G120100.1.p locus=Potri.002G120100 ID=Potri.002G120100.1.v4.1 annot-version=v4.1
ATGGGAGGAGGCAACGGGCAGAAGGCAAAGATGGCTCGCGAGAGGAACCTGGATAAGCAAAAAGCTGGTTCCAAGGGAAGTCAGCTTGAAGCAAACAAGA
AAGCCATGTCGATCCAGTGTAAGGTGTGTATGCAGACATTCATTTGCACCACATCAGAGGTGAAATGCAGAGAGCATGCAGAAGCCAAACACCCCAAATC
TGACGTCTATGCGTGTTTCCCCCACCTCAAGAAATGA
AA sequence
>Potri.002G120100.1 pacid=42778975 polypeptide=Potri.002G120100.1.p locus=Potri.002G120100 ID=Potri.002G120100.1.v4.1 annot-version=v4.1
MGGGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYACFPHLKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G23090 Uncharacterised protein family... Potri.002G120100
[exp]
0 1
AT1G68760 ATNUDX1, ATNUDT... NUDIX HYDROLASE 1, ARABIDOPSIS... Potri.008G114300
[exp]
1.00 0.8495
AT5G47900 Protein of unknown function (D... Potri.009G136700
[exp]
1.73 0.8404
AT1G55790 Domain of unknown function (DU... Potri.006G002700
[exp]
2.44 0.8468
AT1G69330 RING/U-box superfamily protein... Potri.010G161100
[exp]
3.16 0.7764
AT4G20150 unknown protein Potri.003G156301
[exp]
5.29 0.8115
Potri.006G147350
[exp]
5.65 0.7936
AT5G10980 Histone superfamily protein (.... Potri.007G014300
[exp]
5.91 0.8093
AT5G49320 Protein of unknown function (D... Potri.010G140400
[exp]
6.48 0.7941
AT4G14300 RNA-binding (RRM/RBD/RNP motif... Potri.002G258600
[exp]
6.63 0.7744
AT4G39235 unknown protein Potri.002G057100
[exp]
7.34 0.7387

Potri.002G120100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.