Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24230 113 / 3e-28 ACBP3 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) AT4G27780 101 / 5e-24 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 97 / 2e-22 ACBP1 acyl-CoA binding protein 1 (.1) AT3G05420 53 / 2e-07 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 53 / 2e-07 ACBP5 acyl-CoA binding protein 5 (.1) AT1G31812 44 / 7e-06 ACBP6, ACBP acyl-CoA-binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018700 [exp] 414 / 1e-144 AT4G24230 133 / 2e-35 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.012G017700 [exp] 96 / 3e-22 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.015G010200 [exp] 96 / 3e-22 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.013G018800 [exp] 55 / 6e-08 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G026900 [exp] 51 / 9e-07 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.001G130200 [exp] 46 / 2e-06 AT1G31812 140 / 4e-45 acyl-CoA-binding protein 6 (.1) Potri.003G103700 [exp] 41 / 8e-05 AT1G31812 138 / 2e-44 acyl-CoA-binding protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007764 [exp] 135 / 2e-36 AT4G24230 141 / 1e-38 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Lus10018702 [exp] 133 / 7e-34 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10022382 [exp] 100 / 1e-23 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10005910 [exp] 98 / 1e-22 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1) Lus10004499 [exp] 56 / 3e-08 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 55 / 6e-08 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 55 / 6e-08 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 54 / 8e-08 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10013605 [exp] 43 / 3e-05 AT1G31812 132 / 1e-41 acyl-CoA-binding protein 6 (.1) Lus10021246 [exp] 42 / 0.0001 AT1G31812 132 / 1e-41 acyl-CoA-binding protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [poplar] [flax] FERM_M PF00887 [poplar] [flax] ACBP Acyl CoA binding protein
Representative CDS sequence Show only first row Show all	>Potri.002G120200.1 pacid=42778503 polypeptide=Potri.002G120200.1.p locus=Potri.002G120200 ID=Potri.002G120200.1.v4.1 annot-version=v4.1 ATGGAGCTTGTTAAAGAGCTGCTTGTGACTGGTGTTGTTGCTGTTTTGTTTTCTTTTCTGATAGCCAAACTTGTTTCTTTGGCTGCGTCTGGTGGTGATT CCAGCAGTAAAAATGCCAATCGAGAAGTTATTACTGCAGCAGAGATTGTCGGTGAAGAAGAAGGAAAAGTGATCACCGAAGAGTTACGGTTCCGTGAAAG ATTGCAAGTCGAGGGGCTTAAGACCGAAACTAAAACAGAATTTGTTGAACAAGCAACAGAAAAGATCGATGAATTCATCACGGGAATCTTTGCTTTCGAG AACGTTAACGAGGCCGTGAATCGCGAGGAGATACTGCTTGAAATCGAGGCGCGTGAATTGGCTCTAGAATTGATCGAGGCAATTTTAAGAGAAGAAGAGT ACAAGTTAAAGGGAGGAGAATTTGACAATGAAGAGGTCAAACATGTAAATTTGGCTAGTTCAATTAATGAAAACAGAGAAGATGAATCAGTTGGAATTGA ATTAGATGCTGTCGAGACTGATTCAAAAGAGAAGATGAATGAGATTGAAGTCAATGATGACGAGGATGATGATTGGGAAGGGATAGAAAGGAGTGAATTG GAGACAATGTTTGGAGAAGCAGCAAGGTTTGTTGTGGAGTCAGGAGATAAAGATGGGAGATTTGCAGGTGTAGGGAGCGATGTGCAAATGGAGTTGTATG GACTTCATAAGGTTGCCACCGAGGGGCCTTGCCTCCAGAAGCCTCCCATGGCTCTCAAGGTTTCTGCCCGTGCCAAGTGGAATGCTTGGCAAAGGCTGGG AAACATGAGTCCAGAGGCAGCTATGGAGCAGTATATTGTCCTTGTATCTGATAGAGCCCCAGGGTGGATGGAAGACAAACCTGGTGGAGACAGTAAACCA GGATCATCTGAAGTGACAAATCCTGTTGCTGTAACTCCAGATTTAAGTACATTTTCATCCCGGCAACCAGATTGTACAGAAGCAATGACATGTAAGAATC CAGAACCGAAGCTTGGTGCTGAAGAAAGGGATTTGACTGGGGCCTCAAACTGGATAACAGGGCCGAAGAATGACAAGCATTGCTCTGCTGCTTGA
AA sequence Show only first row Show all	>Potri.002G120200.1 pacid=42778503 polypeptide=Potri.002G120200.1.p locus=Potri.002G120200 ID=Potri.002G120200.1.v4.1 annot-version=v4.1 MELVKELLVTGVVAVLFSFLIAKLVSLAASGGDSSSKNANREVITAAEIVGEEEGKVITEELRFRERLQVEGLKTETKTEFVEQATEKIDEFITGIFAFE NVNEAVNREEILLEIEARELALELIEAILREEEYKLKGGEFDNEEVKHVNLASSINENREDESVGIELDAVETDSKEKMNEIEVNDDEDDDWEGIERSEL ETMFGEAARFVVESGDKDGRFAGVGSDVQMELYGLHKVATEGPCLQKPPMALKVSARAKWNAWQRLGNMSPEAAMEQYIVLVSDRAPGWMEDKPGGDSKP GSSEVTNPVAVTPDLSTFSSRQPDCTEAMTCKNPEPKLGAEERDLTGASNWITGPKNDKHCSAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.002G120200 [exp]	0	1
AT5G55530			Calcium-dependent lipid-bindin...		Potri.011G088400 [exp]	1.00	0.8689
AT2G23450			Protein kinase superfamily pro...		Potri.005G130900 [exp]	2.44	0.8293
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Potri.006G249700 [exp]	5.00	0.8231
AT3G09010			Protein kinase superfamily pro...		Potri.016G114800 [exp]	6.63	0.7590
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.016G025300 [exp]	9.59	0.8252
					Potri.002G155700 [exp]	11.48	0.8276
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.005G192300 [exp]	11.53	0.8169
AT5G58720			smr (Small MutS Related) domai...		Potri.009G046300 [exp]	11.61	0.8129
AT3G61550			RING/U-box superfamily protein...		Potri.014G091000 [exp]	13.67	0.8057
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.007G112600 [exp]	15.87	0.7852

Compare expression of checked genes

Potri.002G120200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.