Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 966 / 0 ARA12 Subtilase family protein (.1) AT2G05920 720 / 0 Subtilase family protein (.1) AT5G51750 713 / 0 ATSBT1.3 subtilase 1.3 (.1) AT4G34980 683 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 682 / 0 Subtilase family protein (.1) AT3G14240 679 / 0 Subtilase family protein (.1) AT1G04110 558 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 542 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 537 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 509 / 6e-170 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018900 [exp] 1370 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 910 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 734 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 724 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 712 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 699 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 689 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.004G173900 [exp] 683 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G163600 [exp] 680 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007765 [exp] 1073 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 962 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 932 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 926 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 726 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 724 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 718 / 0 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10018702 [exp] 678 / 0 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 676 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 644 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.002G120400.1 pacid=42779354 polypeptide=Potri.002G120400.1.p locus=Potri.002G120400 ID=Potri.002G120400.1.v4.1 annot-version=v4.1 ATGAGGTCGGAAAGACATGTCATGAAGATGAAAGACTTGAAGTTCGGGCCTCAACTGATAGCTACACTTCTGGTTCTGTGCTTCTGTTACACGTATGCGG TAGCAGAAGTGAAGAAGCAAACGAAGAAGACTTTCATAATTCAAATGGACAAGTCCAATATGCCAGCGACTTACTATGATCATTTCCAATGGTATGATTC ATCTTTAAAATCCGTATCAGAATCTGCTGACATGCTTTACACTTACAACAACATAATCCATGGCTTTTCCACCCAACTCACACCAGACGAAGCTGAATTA CTTGAAAAACAATCCGGAATTCTATCGGTCCTACCTGAAATGATTTACAAGCTGCACACAACTCATACCCCGGAGTTCCTTGGATTGGGAAAAAGTGATG CTGTCCTCCTCCCTGCATCTGCCTCCCTAAGTGAGGTGATTGTTGGAGTACTGGACACCGGTGTCTGGCCAGAGATAAAAAGCTTTGGTGACACAGGGCT TGGCCCAATACCAAGTACCTGGAAAGGTTCTTGTCAGGTGGGTAAGAACTTCAATTCATCAAGCTGTAACCGGAAACTGATAGGTGCACAATATTTCTCA AAAGGGTATGAAGCAGCATTCGGACCTATTGACGAAACAATGGAGTCAAAGTCACCAAGAGACGATGATGGCCATGGAACCCACACTGCAACTACAGCAG CTGGATCAGCTGTCTCAGGAGCTAGCCTTTTCGGGTATGCTTCTGGGATAGCACGTGGAATGGCTACAGAAGCTCGAGTAGCAGCTTACAAGGTGTGTTG GTTGGGTGGATGTTTTAGCTCTGATATTTTAGCAGCAATGGAAAAGGCTGTTGCAGATGGCGTTAATGTCATGTCAATGTCTATTGGAGGAGGACTCTCA GATTACACTCGAGATACAGTTGCGATTGGAGCTTTCCGAGCAGCAGCACAGGGAATTCTTGTCTCATGCTCGGCTGGAAATGGTGGGCCAAGTCCAGGCA GCTTGTCTAATGTCGCTCCTTGGATAACCACTGTAGGTGCTGGAACGTTGGACCGTGATTTCCCAGCCTTTGTGAGCCTTGGAGATGGTAAGAAGTACTC GGGTATATCGCTTTATAGTGGAAAGCCATTATCTGATTCGTTGGTGCCCCTGGTTTATGCTGGTAACGTGAGCAATTCCACAAGCGGCAGCCTTTGCATG ACAGGAACTTTGATTCCTGCACAAGTTGCAGGGAAAATTGTGATATGTGATCGAGGGGGGAATAGCAGGGTCCAAAAGGGCTTGGTGGTGAAAGATTCTG GTGGCCTAGGGATGATTCTTGCAAACACAGAGCTGTATGGGGAAGAGCTAGTCGCTGACGCACATCTTCTTCCCACAGCCGCTGTGGGCCTAAGAACCGC AAATGCAATTAAGAATTATGCCTTCCTTGATCCAAAGCCAATGGGCACGATTGCTTCTGGAGGTACAAAGCTTGGAGTTGAACCATCGCCTGTGGTAGCG GCATTCAGTTCCAGAGGTCCAAATCTGGTCACTCCAGAAGTACTCAAACCAGACCTAATAGCACCTGGAGTCAACATACTAGCGGGATGGACTGGGGGAG CTGGCCCAACTGGGCTAACAAACGACAAGAGGCATGTAGAATTCAATATCATTTCAGGTACATCAATGTCATGTCCCCATGTAAGTGGGTTGGCTGCACT CATCAAGGCTGCTCACCAGGACTGGAGTCCAGCAGCCATTAAGTCCGCTCTCATGACCACAGCCTATGCAACATACAAAAATGGGGAAAACTTATTAGAC GTGGCTACAGGACAACCATCTACGCCATTCGATTATGGAGCTGGACATGTAAATCCAGTAGCAGCCCTTGATCCTGGCCTCGTCTATGATGCCACTGTTG ATGACTACATAAGCTTCTTTTGTGCTTTAAACTATAGTGCATCAGACATTAAACAAATCACAACTAAAGACTTCATTTGCGACTCAAGCAAGAAATACAG CCTGGGGGATCTTAATTACCCATCGTTCTCTGTTCCACTACAAACTGCTTCAGGCAAGGAGGGCGGAGATGGGGTGAAAAGTACAGTCAAATACACCAGG ACTCTGACAAATGTTGGTGCTCCAGCAACATACAAGGTTTCGATGACATCACAAACTACATCTGTTAAGATGTTAGTTGAGCCAGAATCCCTGAGCTTTG CCAAAGAATATGAGAAAAAGAGTTACACGGTGACTTTTACCGCTACATCCATGCCCTCCGGTACGAACAGCTTTGCTCATCTGGAGTGGTCAGACGGGAA GCATGTTGTCCGTAGTCCAATAGCTTTCAGCTGGACATGA
AA sequence Show only first row Show all	>Potri.002G120400.1 pacid=42779354 polypeptide=Potri.002G120400.1.p locus=Potri.002G120400 ID=Potri.002G120400.1.v4.1 annot-version=v4.1 MRSERHVMKMKDLKFGPQLIATLLVLCFCYTYAVAEVKKQTKKTFIIQMDKSNMPATYYDHFQWYDSSLKSVSESADMLYTYNNIIHGFSTQLTPDEAEL LEKQSGILSVLPEMIYKLHTTHTPEFLGLGKSDAVLLPASASLSEVIVGVLDTGVWPEIKSFGDTGLGPIPSTWKGSCQVGKNFNSSSCNRKLIGAQYFS KGYEAAFGPIDETMESKSPRDDDGHGTHTATTAAGSAVSGASLFGYASGIARGMATEARVAAYKVCWLGGCFSSDILAAMEKAVADGVNVMSMSIGGGLS DYTRDTVAIGAFRAAAQGILVSCSAGNGGPSPGSLSNVAPWITTVGAGTLDRDFPAFVSLGDGKKYSGISLYSGKPLSDSLVPLVYAGNVSNSTSGSLCM TGTLIPAQVAGKIVICDRGGNSRVQKGLVVKDSGGLGMILANTELYGEELVADAHLLPTAAVGLRTANAIKNYAFLDPKPMGTIASGGTKLGVEPSPVVA AFSSRGPNLVTPEVLKPDLIAPGVNILAGWTGGAGPTGLTNDKRHVEFNIISGTSMSCPHVSGLAALIKAAHQDWSPAAIKSALMTTAYATYKNGENLLD VATGQPSTPFDYGAGHVNPVAALDPGLVYDATVDDYISFFCALNYSASDIKQITTKDFICDSSKKYSLGDLNYPSFSVPLQTASGKEGGDGVKSTVKYTR TLTNVGAPATYKVSMTSQTTSVKMLVEPESLSFAKEYEKKSYTVTFTATSMPSGTNSFAHLEWSDGKHVVRSPIAFSWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.002G120400 [exp]	0	1
AT3G55580			Regulator of chromosome conden...		Potri.010G199100 [exp]	2.44	0.7303
AT5G65470			O-fucosyltransferase family pr...		Potri.007G011000 [exp]	9.38	0.7273
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.002G070700 [exp]	9.79	0.7801
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.009G140100 [exp]	10.77	0.7361
AT4G37820			unknown protein		Potri.002G112800 [exp]	15.81	0.6689
AT3G51990			Protein kinase superfamily pro...		Potri.009G055200 [exp]	19.89	0.6735
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.005G064300 [exp]	20.19	0.6756	PtrWBC5-1
AT1G22610			C2 calcium/lipid-binding plant...		Potri.019G080000 [exp]	23.64	0.6319
AT1G61900			unknown protein		Potri.011G003000 [exp]	24.91	0.6594
AT3G55580			Regulator of chromosome conden...		Potri.008G059800 [exp]	28.19	0.6234

Compare expression of checked genes

Potri.002G120400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.