Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 570 / 0 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 238 / 4e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G019700 [exp] 766 / 0 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 619 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 616 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 595 / 0 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 590 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 571 / 0 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 570 / 0 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 294 / 4e-97 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 289 / 3e-95 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018705 [exp] 584 / 0 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032854 [exp] 565 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 511 / 0 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 413 / 2e-145 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 290 / 3e-95 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 278 / 9e-91 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 248 / 7e-79 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 228 / 4e-71 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024788 [exp] 82 / 2e-19 ND 81 / 6e-24 Lus10039688 [exp] 85 / 6e-19 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.002G120700.1 pacid=42779623 polypeptide=Potri.002G120700.1.p locus=Potri.002G120700 ID=Potri.002G120700.1.v4.1 annot-version=v4.1 ATGAGCCGGTGGTGGGCAGGTGCAATTGGAGGTGCCAAGCAGCAGTCTGAAAATGGCAACGCGTTCCGAGGACACCATAGCGTGGCTCTAGTAATAGGCG TAACTGGCATTGTTGGCAACAGCTTAGCTGAAATCCTTCCACTCTCCGACACACCTGGTGGACCATGGAAAGTCTACGGAGTGGCCCGTCGTCCACGACC AAATTGGAACTTAGACCACCCTGTTGAATACATCCAATGTGACATATCTAACACGGCGGAAACTCAAGCAAAACTCTCCCAGCTAACTGATGTTACTCAT ATTTTCTATGTCACATGGGCCCTCCGATTCACGGAGGCCGAGAACATCGAAGCTAATAACCTCATGTTCCGCAATGTCCTCCAGGCTGTTATCCCCAACG CCCTCAATCTCAAACATGTTTGCCTCCAAACTGGTCTTAAACACTATGTTGGTCCATTCGAGTTGGTAGGCAAGATCGAACCACATGACACTCCTTACAC GGAGGATCTGCCCAGATTAAACGCACCCAATTTTTACTACGATTTGGAAGACATTCTGGCCGGGGAAGTGGCAAAGAAAGAGGGAGTGACTTGGTCTGTG CACAGGCCGCATACAATTTTGGGGTTTTCTCCATATAGTTTGATGAACATAATGGGCACCCTTTGTGTTTACGCTGCTATATGTAAACATGAAGGGATGC CTTTACTGTTCCCTGGGACCGAGTCTGTTTGGGATGCTTATTCCATCGCATCTGATGCAGATCTGATTGCTGAGCAGGAAATTTGGGCAGCTGTGGATCC TAATGCACGAAATGAAGCGTTTAATATCCACAATGGAGATGTTTTTAAGTGGAAGCATTTGTGGAAGGTTTTGGCTGAACAGTTCGGGATAAAAAAATAT GGTTTGCCTGAGAGTGGGAAGAAAGTGAGCTTGACGGAGTTGATGAAGGATAAAGGAGCAGTGTGGGAGAAAATTGTGAAGGATAATCAGCTGTTGCCTA ACAAGTTGGAGGAGGTAGGAGTGTGGTGGTTTGCAGATTTTGTGTTGGGTGCAGAGTCCATTATTTCGTGTATGAATAAGAGTAAGGAGCATGGGTTTCT GGGGTTTAGGAATTCCAAGAATTCACTGATTTCGTGGGTGGACAAGTTGAAGGCTCATAAGATTGTGCCTTGA
AA sequence Show only first row Show all	>Potri.002G120700.1 pacid=42779623 polypeptide=Potri.002G120700.1.p locus=Potri.002G120700 ID=Potri.002G120700.1.v4.1 annot-version=v4.1 MSRWWAGAIGGAKQQSENGNAFRGHHSVALVIGVTGIVGNSLAEILPLSDTPGGPWKVYGVARRPRPNWNLDHPVEYIQCDISNTAETQAKLSQLTDVTH IFYVTWALRFTEAENIEANNLMFRNVLQAVIPNALNLKHVCLQTGLKHYVGPFELVGKIEPHDTPYTEDLPRLNAPNFYYDLEDILAGEVAKKEGVTWSV HRPHTILGFSPYSLMNIMGTLCVYAAICKHEGMPLLFPGTESVWDAYSIASDADLIAEQEIWAAVDPNARNEAFNIHNGDVFKWKHLWKVLAEQFGIKKY GLPESGKKVSLTELMKDKGAVWEKIVKDNQLLPNKLEEVGVWWFADFVLGAESIISCMNKSKEHGFLGFRNSKNSLISWVDKLKAHKIVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120700 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066600 [exp]	1.41	0.9951
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066800 [exp]	2.00	0.9943
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019700 [exp]	2.23	0.9843
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132900 [exp]	2.82	0.9845
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066400 [exp]	3.00	0.9862
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.009G103800 [exp]	3.31	0.9666
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.002G018300 [exp]	4.24	0.9759	CADL2
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.004G082000 [exp]	6.48	0.9759
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171268 [exp]	7.48	0.9745
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014500 [exp]	7.93	0.9724

Compare expression of checked genes

Potri.002G120700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.