Plant FIBer expression Database

Potri.002G120800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43120 635 / 0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
AT5G10200 542 / 0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
AT3G50030 500 / 6e-172 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G052300
[exp]
705 / 0 AT5G43120 580 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Potri.005G076300
[exp]
550 / 0 AT5G10200 1113 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Potri.007G092100
[exp]
543 / 0 AT5G10200 1085 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Potri.005G097300
[exp]
45 / 0.0001 AT1G56090 260 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.006G178900
[exp]
44 / 0.0002 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Potri.018G100700
[exp]
43 / 0.0005 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018706
[exp]
627 / 0 AT5G43120 534 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Lus10024789
[exp]
611 / 0 AT5G43120 533 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Lus10006301
[exp]
544 / 0 AT5G10200 1059 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Lus10029573
[exp]
543 / 0 AT5G10200 1056 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1)
Lus10022500
[exp]
46 / 7e-05 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
Lus10016804
[exp]
44 / 0.0003 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13414 TPR_11 TPR repeat
Representative CDS sequence
>Potri.002G120800.1 pacid=42777489 polypeptide=Potri.002G120800.1.p locus=Potri.002G120800 ID=Potri.002G120800.1.v4.1 annot-version=v4.1
ATGGATTCCCTGAAGAAAAAGGAGAAGATAATTCACACCATAACCACTACCAGCAGTAACGAAAGCATTATTGATATTGGTACTGAACAGAACTGCATCA
ATCCCAGTTGTTTCTTTTGCACGATGAAAGAGCCAGACTCAATGATCAGGAGAGCAGGACTACAGAGTTGTTTCAAGGAAATGCCTTTCAGAGACAGCCA
AGCACTTGCTCTGGTTCTTAGCGGTCTATGGAATATTGCTATGACACAACCAGATGATCCAGAGTTCCCATCCCTCGGTGTTTTCCACTGCATGGCAAGT
TTGATCCAGAAAGGTATTGATAATAGAAGTTGGCTTCTTAAGGATCAAAACATTTACATCCCTTACTATGCAGCTCATATTATTGGCTCTTACACCATGA
ACAAGGTTAAGTTTGCAGAGAAAGCTGTTCAATCTGGTGTGATACCTCCATTAATGGATCTTTTAAGAGGAAAGATTAGTTGGGTAGAGCAAAGAGTTGC
CGTTCGAGCTCTGGGTCACCTTGCAAGCTTTGAGAAAACGTTTGATGCAGTAGCAATGTATGAAGAAGATGTGGTGAAATCAGCTATGCAGTTAGCTTCC
AATTGCCTTGAAGTGGTGTACTCAAAATTCGTTGGGGTACGGGATGCAAAGGAGAGGCTGAAGTATCATAGTGACTTGCTCACAAGAGGTGTTGGAGGGC
TGGACACTGAGAACAGGAAAGCAGAGGAGTGGGCTTGCCAACTTCAACGCTGGTCTCTCAATCTCTTAAATTGCTTTGCTTGCAAAGAAAGGTCTCTGAA
TCTCATTTGTAGGCAGGATTTTTTAAGAGATTTGTGTGAAATGTGGGGTGGATTGGTGATGAATCACGTATCACCTTCTGGGGTTGGACTCATTAGAATT
TTATGTTACAGCAAACACGGAAGAAAGAGTATTGCTGAATCCAAAGAAGTTGTAAGAAGTCTCTGTAATCTCTCGAGATCTTCAGATGATTGGCAGTATA
TTGGTATTGATTGTCTTCTATTACTTCTCAAGGACCAAGATACCAGGTTTAAAGTTATAGAAGTTTCCGCCTTGTTTCTTGTAGATTTGGTTGAACTCAG
GAGCCTTGGCAATCGATCAAATGTAGGAGATGCAATCGCAAGAGTACTTCTTTTTTATTACAGACAAAGCATGTTGAAATTAAAGAACAGCGAAGTTCAA
AAAGTTATGCAAGAAATTTGGGATTTGAAGGTAGAGAGGAGAAAACGAGAGAAAACAATGACTGAAGAAATGGTTGAAGAGAGAAGGGTTTTGGCGGGTT
TGATAAAACAACAGGGCAACCACATGTTTTGGCTAGGAAACATAGAAGAAGCATCGGTGAAGTATACTGAAGCACTAGATTTATGTCCATTGAGGTTAAG
AAAAGAGAGAGTGGCACTTTACAGTGACCGAGCTCAGTGTCGCTTGCAGCTTGGGAACCCAGATGCTGCCATTAGTGACTTAACTAGAGCTCTGTGCCTG
TCTACTCCTGCAAATTCTCACAGCAAGAGCCTATGGAGAAGATCACAGGCCTTTGACATAAAAAGGTTGGCCAAAGAAAGCTTGATGGACTGTGTAATGT
ACCTGAATGGCTGCATCAAGACTGAAACAGCCAAAGGTGTGAAAATTCCATACCATGCAGCACGTATGATCAGCAAACAGATGGAAGCTACGTGGCTTTT
TGCCAATCTGAAGTCAAAAACATCAAGCAATCAATCAAGTAGAGTGCAAGAACTGGATGGTGACTCTGAGAATTATGACAAGCAAAAACATGATGAGATG
ATGAGAATTATGATAGAGAAAAAAGGTTTTATCTCCAGGCTGTCCACCATAGGAAATGAAGGGGTGGAGAGAGAGATGGAAAGGGCAAGGAGTAAGAAAG
CTGTTGTGGCTCGATCAATGGAAGGTAGATGGGGATCAGGATTGTTGCGTGCTGAGGGAGAGATACTGTGA
AA sequence
>Potri.002G120800.1 pacid=42777489 polypeptide=Potri.002G120800.1.p locus=Potri.002G120800 ID=Potri.002G120800.1.v4.1 annot-version=v4.1
MDSLKKKEKIIHTITTTSSNESIIDIGTEQNCINPSCFFCTMKEPDSMIRRAGLQSCFKEMPFRDSQALALVLSGLWNIAMTQPDDPEFPSLGVFHCMAS
LIQKGIDNRSWLLKDQNIYIPYYAAHIIGSYTMNKVKFAEKAVQSGVIPPLMDLLRGKISWVEQRVAVRALGHLASFEKTFDAVAMYEEDVVKSAMQLAS
NCLEVVYSKFVGVRDAKERLKYHSDLLTRGVGGLDTENRKAEEWACQLQRWSLNLLNCFACKERSLNLICRQDFLRDLCEMWGGLVMNHVSPSGVGLIRI
LCYSKHGRKSIAESKEVVRSLCNLSRSSDDWQYIGIDCLLLLLKDQDTRFKVIEVSALFLVDLVELRSLGNRSNVGDAIARVLLFYYRQSMLKLKNSEVQ
KVMQEIWDLKVERRKREKTMTEEMVEERRVLAGLIKQQGNHMFWLGNIEEASVKYTEALDLCPLRLRKERVALYSDRAQCRLQLGNPDAAISDLTRALCL
STPANSHSKSLWRRSQAFDIKRLAKESLMDCVMYLNGCIKTETAKGVKIPYHAARMISKQMEATWLFANLKSKTSSNQSSRVQELDGDSENYDKQKHDEM
MRIMIEKKGFISRLSTIGNEGVEREMERARSKKAVVARSMEGRWGSGLLRAEGEIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43120 ARM-repeat/Tetratricopeptide r... Potri.002G120800
[exp]
0 1
Potri.004G015401
[exp]
3.74 0.7826
AT5G39450 F-box family protein (.1) Potri.007G102000
[exp]
10.09 0.7737
AT4G33400 Vacuolar import/degradation, V... Potri.014G029600
[exp]
17.54 0.7505
AT1G04570 Major facilitator superfamily ... Potri.008G173600
[exp]
18.49 0.7506
AT5G04940 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(... Potri.016G025300
[exp]
29.49 0.7567
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Potri.008G183600
[exp]
39.03 0.7401
AT5G67390 unknown protein Potri.007G053300
[exp]
41.23 0.7158
AT4G34430 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3... Potri.009G114900
[exp]
45.23 0.7406 CHB901,SWI3.4
AT2G22430 HD ATHB6 homeobox protein 6 (.1) Potri.005G071900
[exp]
45.95 0.7487
AT1G12910 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYA... Potri.016G075800
[exp]
46.79 0.7408

Potri.002G120800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.