Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56510 277 / 3e-86 APUM12 pumilio 12 (.1) AT1G78160 259 / 6e-79 APUM7 pumilio 7 (.1) AT1G22240 253 / 6e-78 APUM8 pumilio 8 (.1) AT1G35730 253 / 2e-77 APUM9 pumilio 9 (.1) AT4G08840 249 / 4e-76 APUM11 pumilio 11 (.1) AT1G35750 231 / 3e-69 APUM10 pumilio 10 (.1) AT4G08560 181 / 6e-51 APUM15 pumilio 15 (.1) AT5G43090 174 / 4e-48 APUM13 pumilio 13 (.1) AT5G43110 167 / 1e-45 APUM14 pumilio 14 (.1) AT3G20250 153 / 1e-39 APUM5 pumilio 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G020300 [exp] 767 / 0 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.003G222300 [exp] 297 / 2e-92 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.001G002600 [exp] 293 / 6e-91 AT5G56510 525 / 3e-179 pumilio 12 (.1) Potri.002G095400 [exp] 266 / 1e-80 AT1G78160 473 / 8e-158 pumilio 7 (.1) Potri.001G298000 [exp] 226 / 9e-67 AT5G56510 211 / 2e-60 pumilio 12 (.1) Potri.010G225600 [exp] 163 / 8e-43 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G036500 [exp] 153 / 2e-39 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 152 / 4e-39 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.003G009900 [exp] 151 / 6e-39 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024793 [exp] 375 / 1e-124 AT5G56510 283 / 1e-87 pumilio 12 (.1) Lus10018710 [exp] 375 / 1e-124 AT5G56510 281 / 3e-87 pumilio 12 (.1) Lus10036469 [exp] 246 / 2e-75 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10041139 [exp] 245 / 6e-74 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10037976 [exp] 161 / 3e-42 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10033353 [exp] 152 / 5e-39 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 152 / 6e-39 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10038706 [exp] 148 / 1e-37 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10016513 [exp] 146 / 4e-37 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10000516 [exp] 140 / 8e-37 AT2G29200 638 / 0.0 pumilio 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat
Representative CDS sequence Show only first row Show all	>Potri.002G120900.1 pacid=42778526 polypeptide=Potri.002G120900.1.p locus=Potri.002G120900 ID=Potri.002G120900.1.v4.1 annot-version=v4.1 ATGGACCCTTACCAGCAGCAGCAGCGCCGCAGATTTCTTGCTGGAACGGCGCCGTTTTCCCCTGAGACTCCCTTTTCCCGTTTAATCGATCAAAGCCTTG CGAGCCCTGAAACTTCTACTCAAAACCCCTACCTAGAAACTCTTGAATCTCTCTTCTTAAGACTCAATGTATCTCATGATAATCAAACTTTATATTCAGG TTCTCATGACAATATCTTTAATGGGTCTGTTGTAGATTTTAAAATTTTGGATGATCTTGCCTCTAGCGGCCAGGTTGGTTTTTTGCCAACCCAAAACAAT GATATAAATGCTTTCGGGGCTACGAGGGTTCAAGATTTTGTTCACAATCCAATGATGGCTGGTTCTAATTCTGATTTGAGGAGTAATACTTTCGTTTATG GTGGTGCGTATCAAAATCCAAACCTTAACAACCGGAGAGGATTAATGCAAAGAGAATCGCATTATGGGTCGATGAATAATGTTTTGGTGTCTAAAAGCCA GAATTATGGGAGGAGGCCACCTTGGTTACAAGATTACGTGTCCTGGGAGGATTTGAGTGGTAAGATCGTGGCATTGGCTAAGGATCAACACGGATGTAAG TTCTTACAAAGGCTTATTGAGAGTGCAACAAGAGAACAAATTGATATGTTGTTTTACGAAGTGATAGACTATGTTGGGGGGTTGATAGCGGACCCATTTG GGAATTATGTTGTACAAAAGCTTATAGAGGTGATTAGTGAGGAACAGAGGACTCGGGTTTTGCGAATGCTAACTCGAACGGATTTTCAACTCGTGAGGAT TTGTCTTGATGTGCATGGAACTCGGGCTGTACAGAAGTTGTTGAATTGTATTACAAACCCTCTGCAAGTTTCTTTAGTTGTATCAGCTCTAAACCAAGGT GCTGTTGCATTGATAAAGGATTCCAATGGTCATCATGTGATCCAGCATTCTATGAAGCATTTTTCTCCTCAAGACAATAAGTATATTTTGAAACAGGTGG CAGAAAAGTGCTTTGAGATTGCAACCAACAAGAGTGGATGCTGTGTGCTGCAGCGATGTGTTGAATACTCTGAGGGAGAACACAGAGATCGACTGGTAGC TGAGATCATAGCAAATGCACTACTCCTGGCTGAAGATCATTATGGAAACTATGTAGTGCAACATATTCTGGATTTAAAGATGCCACAAATCACAGAAAAT CTCCTCACACAGTTTGAAGGGAGCTACATGGCTCTTTCATGTAACAAGTATGGAAGTAATGTTGTGGAGAAGTGCTTGTTAACAACAAGTGAGGATCAAT CCACACAAATAATCTTGGAGTTGCTAAGCAATCCAGGTGCTTCCATGCTCCTTGTGGATCCTTTCGGAAACTTTGTTATCCAGAAGGCACTATCAGTATC TCAGGGTGAAGTCCAAAGAGGTTTAATTGCTCTGATAGAAAGGAACAGTCAAATGATGATCAGCAATATCTATGGGCAGAAGGTGCTTGTTTGGCTGACC AAGAATAGGAGACTGCTAAACCTATAG
AA sequence Show only first row Show all	>Potri.002G120900.1 pacid=42778526 polypeptide=Potri.002G120900.1.p locus=Potri.002G120900 ID=Potri.002G120900.1.v4.1 annot-version=v4.1 MDPYQQQQRRRFLAGTAPFSPETPFSRLIDQSLASPETSTQNPYLETLESLFLRLNVSHDNQTLYSGSHDNIFNGSVVDFKILDDLASSGQVGFLPTQNN DINAFGATRVQDFVHNPMMAGSNSDLRSNTFVYGGAYQNPNLNNRRGLMQRESHYGSMNNVLVSKSQNYGRRPPWLQDYVSWEDLSGKIVALAKDQHGCK FLQRLIESATREQIDMLFYEVIDYVGGLIADPFGNYVVQKLIEVISEEQRTRVLRMLTRTDFQLVRICLDVHGTRAVQKLLNCITNPLQVSLVVSALNQG AVALIKDSNGHHVIQHSMKHFSPQDNKYILKQVAEKCFEIATNKSGCCVLQRCVEYSEGEHRDRLVAEIIANALLLAEDHYGNYVVQHILDLKMPQITEN LLTQFEGSYMALSCNKYGSNVVEKCLLTTSEDQSTQIILELLSNPGASMLLVDPFGNFVIQKALSVSQGEVQRGLIALIERNSQMMISNIYGQKVLVWLT KNRRLLNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56510		APUM12	pumilio 12 (.1)		Potri.002G120900 [exp]	0	1
AT3G55550			Concanavalin A-like lectin pro...		Potri.008G058400 [exp]	6.78	0.7796
AT2G18030			Peptide methionine sulfoxide r...		Potri.007G012900 [exp]	16.97	0.8116	PtrcMsrA5
AT4G34960			Cyclophilin-like peptidyl-prol...		Potri.004G173500 [exp]	27.92	0.8016
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	48.62	0.7876
AT4G29870			Oligosaccharyltransferase comp...		Potri.006G072600 [exp]	53.10	0.7816
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.008G168100 [exp]	60.96	0.7653	CKI1.3
AT5G07610			F-box family protein (.1)		Potri.001G146000 [exp]	62.92	0.7705
AT5G11460			Protein of unknown function (D...		Potri.006G245200 [exp]	72.80	0.7467
AT1G09812			unknown protein		Potri.004G224200 [exp]	87.41	0.7786
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.005G128000 [exp]	99.79	0.7245

Compare expression of checked genes

Potri.002G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.