Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-IFS1.51
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 470 / 1e-162 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 469 / 2e-162 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37360 454 / 2e-156 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT5G36220 449 / 3e-154 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37400 441 / 6e-151 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT2G23190 440 / 4e-150 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT4G37320 436 / 2e-149 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT5G57220 435 / 4e-149 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1) AT4G37330 435 / 8e-149 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37430 429 / 1e-146 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G121200 [exp] 930 / 0 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.014G020500 [exp] 633 / 0 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121100 [exp] 610 / 0 AT4G37370 429 / 2e-146 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020600 [exp] 598 / 0 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020432 [exp] 588 / 0 AT4G37370 440 / 4e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 483 / 2e-167 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G006000 [exp] 482 / 2e-167 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G021800 [exp] 476 / 1e-164 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.003G007000 [exp] 469 / 6e-162 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018711 [exp] 515 / 5e-180 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10020437 [exp] 501 / 1e-174 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018717 [exp] 482 / 6e-167 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 462 / 3e-159 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024816 [exp] 457 / 4e-157 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10011958 [exp] 451 / 4e-155 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10024818 [exp] 445 / 2e-152 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024820 [exp] 440 / 2e-150 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10027614 [exp] 404 / 3e-137 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10010373 [exp] 394 / 2e-133 AT4G37370 375 / 3e-126 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G121400.1 pacid=42776893 polypeptide=Potri.002G121400.1.p locus=Potri.002G121400 ID=Potri.002G121400.1.v4.1 annot-version=v4.1 ATGTTCTTGCACTTTCTGCTCCTCTATTTAGTTCTGTATGTACTTACCAATCACTTCCGCAACAAGATCCAAAACCTCCCACCAAGCCCATTCCCTGCTC TCCCCATAATAGGCCATCTCCATCTCCTCAAGAAACCCCTCCACCGATCCCTATCAAAGATATCCAACAGACACGGCCCTGTAGTACTCCTACAGCTTGG CTCCCGTCGTGTTCTTGTAGTTTCCTCCCCTTCAGCTGCAGAAGAATGTTTTACCAAGAATGATATTGTCTTTGCCAATCGTCCACACCTACTTGCAGGA AAACACTTGGGCCGCAACTACACGACCCTTCCATGGGCACCACACGGTGACCTTTGGCGCAATCTTCGTAAAATCTCCTCCCTTGAAATCTTATCCTCTA ACCGTCTCCAGTTGCTTTCTAGCATACGCACGGAAGAGGTCAAGTTGTTGATTCGCCGTCTCTTCAAAAACAATGATCAGATCATAGATTTGAAATCGTC ATTTTTCGAGCTCATGCTAAATGTGATGATGAGGATGATAGCTGGAAAGAGATATTACGGTGAAAACGAGGCTGAAGTGGAGGAGGGGAGGAGATTTCGA GAGATCGTGACAGAGACTTTCCAGGTCAGTGGCGCATCAGCTGTGGGAGACTTCTTACATGTGTTGGCTGTGATAGGAGGAACGGAGAAGAGGTTCATGA AGCTGCAGGAAAAGAGAGATGGGTTTATGCAAGAGTTGGTGGATGAGCCCAGGAGAAGAATGGGGAATAACAAGAGCTGTTTTTCTAATGAGAGAAATTA CAAGACCATGATTGAGGTTTTGCTAACACTGCAAGAATCAGAACCTGAGTACTATAAGGATGAAACTATCAAGGACCTTATGGTGGTTCTACTGTCTGCC GGGACAGATACTACAGCTGGGACAGTGGAGTGGGCATTGTCACTTCTGCTGAACAATCCTCTGATTTTAAAGAAAGCACAAAATGAAATTGACAAGGTTG TTGGACAAGATCGTCTAATTGATGAATCTGATGTGGCTAAGCTCCCTTATCTACACTGCGTCATAAAGGAAACTATGCGAATGTACCCAGTAGGCCCATT GCTAGTGCCTCACGAGTCATCAGAGGAGTGTGTGGTAGGAGGGTTCCAGATACCACGCGGCACCATGTTGTTGGTGAACATATGGGCAATACAGAATGAT CCTAAAATCTGGGACGACGCAGCAAAATTTAAGCCAGAAAGGTTCGACGGTTCCGAGGGAGTTAGAGATGGGTTCAAACTGATGCCTTTCGGATCAGGAA GGAGGAGTTGTCCTGGGGAAGGTTTGGCCATGCGCATGGCTGGATTGACTCTGGGGTCATTACTTCAGTGTTTCGAATGGGACAGGGTTAGCCAGGAAAT GGTGGACCTGACAGAGGGGACTGGACTCAGTATGCCCAAGGCTCAGCCTTTACTGGCCAGGTGCACTTCACGTCCATCGATGGCTAACCTTCTTTCTCAA ATTTGA
AA sequence Show only first row Show all	>Potri.002G121400.1 pacid=42776893 polypeptide=Potri.002G121400.1.p locus=Potri.002G121400 ID=Potri.002G121400.1.v4.1 annot-version=v4.1 MFLHFLLLYLVLYVLTNHFRNKIQNLPPSPFPALPIIGHLHLLKKPLHRSLSKISNRHGPVVLLQLGSRRVLVVSSPSAAEECFTKNDIVFANRPHLLAG KHLGRNYTTLPWAPHGDLWRNLRKISSLEILSSNRLQLLSSIRTEEVKLLIRRLFKNNDQIIDLKSSFFELMLNVMMRMIAGKRYYGENEAEVEEGRRFR EIVTETFQVSGASAVGDFLHVLAVIGGTEKRFMKLQEKRDGFMQELVDEPRRRMGNNKSCFSNERNYKTMIEVLLTLQESEPEYYKDETIKDLMVVLLSA GTDTTAGTVEWALSLLLNNPLILKKAQNEIDKVVGQDRLIDESDVAKLPYLHCVIKETMRMYPVGPLLVPHESSEECVVGGFQIPRGTMLLVNIWAIQND PKIWDDAAKFKPERFDGSEGVRDGFKLMPFGSGRRSCPGEGLAMRMAGLTLGSLLQCFEWDRVSQEMVDLTEGTGLSMPKAQPLLARCTSRPSMANLLSQ I

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121400 [exp]	0	1	Pt-IFS1.51
AT1G06050			Protein of unknown function (D...		Potri.007G130400 [exp]	6.00	0.9229
AT3G55640			Mitochondrial substrate carrie...		Potri.010G197400 [exp]	9.11	0.8520
AT3G23360			Protein phosphatase 2C family ...		Potri.008G168400 [exp]	10.58	0.8594
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.009G098100 [exp]	10.95	0.9147
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Potri.014G006000 [exp]	12.32	0.8534
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Potri.002G121200 [exp]	18.41	0.8942	Pt-IFS1.43
AT5G19540			unknown protein		Potri.018G080900 [exp]	18.97	0.8754
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038524 [exp]	26.83	0.8527
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040700 [exp]	30.28	0.8908
AT1G66910			Protein kinase superfamily pro...		Potri.015G018101 [exp]	39.64	0.8914

Compare expression of checked genes

Potri.002G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.