Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYCA3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47230 473 / 7e-168 CYCA3;4 CYCLIN A3;4 (.1.2) AT5G43080 462 / 6e-164 CYCA3;1 Cyclin A3;1 (.1) AT1G47210 457 / 9e-162 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47220 380 / 5e-132 CYCA3;3 Cyclin A3;3 (.1) AT1G44110 328 / 1e-109 CYCA1;1 Cyclin A1;1 (.1) AT5G11300 313 / 6e-104 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT1G15570 306 / 3e-101 CYCA2;3 CYCLIN A2;3 (.1) AT1G80370 306 / 3e-101 CYCA2;4 Cyclin A2;4 (.1) AT5G25380 301 / 2e-99 CYCA2;1 cyclin a2;1 (.1) AT1G77390 285 / 4e-93 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021100 [exp] 631 / 0 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.009G093100 [exp] 348 / 2e-118 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.002G080000 [exp] 325 / 8e-108 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.018G034100 [exp] 319 / 1e-105 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.005G181400 [exp] 318 / 2e-105 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.001G177100 [exp] 317 / 7e-105 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.006G247200 [exp] 312 / 5e-103 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.003G058200 [exp] 306 / 6e-101 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.002G010000 [exp] 193 / 1e-57 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018715 [exp] 476 / 2e-168 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10024822 [exp] 474 / 1e-167 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10029700 [exp] 318 / 6e-106 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10028544 [exp] 312 / 6e-104 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10008103 [exp] 314 / 9e-104 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10042739 [exp] 308 / 9e-101 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10014199 [exp] 301 / 5e-100 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10013886 [exp] 295 / 4e-98 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10026598 [exp] 249 / 1e-81 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1) Lus10012261 [exp] 186 / 2e-54 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G121500.1 pacid=42777195 polypeptide=Potri.002G121500.1.p locus=Potri.002G121500 ID=Potri.002G121500.1.v4.1 annot-version=v4.1 ATGAGTTCAATGGCAGAGCAAGAGAACTGCACCCGCGTTACTCGCGCTGCCAAAAAGAGGGCGGCTGCGCTGGCTTCCACGGAGGACCAACCCTTGAATA AGAAGAGGGTTGTGCTGGGAGAGCTTCCCAACTTATCAAACGCCATCGTTTCATCAAACGAGCCCCAGAAGCAGAAAGCAAAAGCAAAGCCAAAGGCAAG GAAGGGGGCTTCAACGAAGAAGGAGGGTGTTCTCAAAGAGGATGTTGATGGGAACCCTGAAGATCCCCAAATGTGTGCACCATATGCATCTGATATTTAT GAGTATCTTCATAAAATGGAGGTGGATCCAAAAAGAAGGCCACTGCCTGATTACATTGAGAAGGTTCAAAAAGATGTGAGTCCCAATATGAGAGGGATTT TGGTGGATTGGTTGGTGGAGGTCGCAGAGGAATACAAGCTTGTCTCTGAGACCTTGTATCTTACTGTTTCTTACGTTGACAGATTCTTGTCTTTCAATGT TCTCAGCAGGCAGAGGCTTCAGCTTCTTGGTGTTTCTTCTATGCTTCTTGCCTCAAAGTATGAAGAAATCAACCCTCCGCATGTGGAAGATTTTTGCTAC ATTACAGATAATACATACACCAAGGAAGAGGTGGTTAAAATGGAAGCTGACATACTTAAATCTTTGAAATTTGAAATGGGGAATCCTACGATAAAGACAT TTCTAAGGAGATTCACTAGGGTTGCTCTAGAGGACTACAAAACTTCAAATTTGCAGCTTGAGTTCCTCGGATTCTACCTTGCTGAGTTGAGCTTGTTGGA TTACAATTGTGTGAAATTTTTACCTTCTTTGGTGGCTGCTTCTGTTATATTTCTTACAAGGTTTCTGATGCGACCCAAGACAAATCCTTGGAGTTCAACC TTGCAACAATACACTGGATACAAGGCAGCGGATCTAAGGGAATGTGTTCTCATCATACATGACTTGTATTTGAGTAGAAGAGGAGGTGGATTGCAAGCTG TAAGAGAAAAATACAAGCAGCATAAGTTCAAGTGCGTGGCAAACATGCCTTCCCCGCCAGAGTTACCAGCTTTATATTTCGAAGAGGTTTAA
AA sequence Show only first row Show all	>Potri.002G121500.1 pacid=42777195 polypeptide=Potri.002G121500.1.p locus=Potri.002G121500 ID=Potri.002G121500.1.v4.1 annot-version=v4.1 MSSMAEQENCTRVTRAAKKRAAALASTEDQPLNKKRVVLGELPNLSNAIVSSNEPQKQKAKAKPKARKGASTKKEGVLKEDVDGNPEDPQMCAPYASDIY EYLHKMEVDPKRRPLPDYIEKVQKDVSPNMRGILVDWLVEVAEEYKLVSETLYLTVSYVDRFLSFNVLSRQRLQLLGVSSMLLASKYEEINPPHVEDFCY ITDNTYTKEEVVKMEADILKSLKFEMGNPTIKTFLRRFTRVALEDYKTSNLQLEFLGFYLAELSLLDYNCVKFLPSLVAASVIFLTRFLMRPKTNPWSST LQQYTGYKAADLRECVLIIHDLYLSRRGGGLQAVREKYKQHKFKCVANMPSPPELPALYFEEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	0	1	CYCA3.1
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	1.00	0.9540	Pt-ATBRCA1.1
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	2.00	0.9196
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Potri.012G060000 [exp]	2.82	0.9138	Pt-MSH2.1
AT3G56870			unknown protein		Potri.014G181200 [exp]	3.00	0.9192
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	3.87	0.9044
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	5.65	0.8869	HFO909
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	6.00	0.9035
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.014G143900 [exp]	6.24	0.8606
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	7.00	0.8941
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	7.34	0.8657

Compare expression of checked genes

Potri.002G121500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.