Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-IFS1.53
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10600 490 / 4e-170 CYP81K2 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) AT5G10610 485 / 2e-168 CYP81K1 "cytochrome P450, family 81, subfamily K, polypeptide 1", cytochrome P450, family 81, subfamily K, polypeptide 1 (.1) AT4G37330 382 / 4e-128 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37320 380 / 4e-127 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37370 377 / 6e-126 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37430 372 / 3e-124 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT5G36220 369 / 5e-123 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37360 367 / 3e-122 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT2G23190 368 / 7e-122 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT3G28740 364 / 8e-121 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021400 [exp] 683 / 0 AT5G10600 437 / 2e-149 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.014G021700 [exp] 522 / 0 AT5G10600 436 / 7e-149 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.002G121200 [exp] 457 / 2e-157 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.002G121400 [exp] 447 / 1e-153 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.017G028200 [exp] 446 / 1e-152 AT5G10600 374 / 2e-124 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.017G028450 [exp] 446 / 1e-152 AT5G10600 374 / 2e-124 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.017G028100 [exp] 446 / 1e-152 AT5G10610 374 / 2e-124 "cytochrome P450, family 81, subfamily K, polypeptide 1", cytochrome P450, family 81, subfamily K, polypeptide 1 (.1) Potri.017G028150 [exp] 444 / 7e-152 AT5G10600 373 / 4e-124 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.014G020500 [exp] 432 / 1e-147 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009909 [exp] 550 / 0 AT5G10600 481 / 2e-166 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Lus10020437 [exp] 396 / 2e-133 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 389 / 2e-130 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10018717 [exp] 386 / 3e-129 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024820 [exp] 377 / 1e-125 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10011958 [exp] 376 / 2e-125 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10024816 [exp] 376 / 2e-125 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024818 [exp] 374 / 2e-124 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10018711 [exp] 359 / 8e-119 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10041643 [exp] 353 / 2e-116 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G121900.1 pacid=42779577 polypeptide=Potri.002G121900.1.p locus=Potri.002G121900 ID=Potri.002G121900.1.v4.1 annot-version=v4.1 ATGTTTGAAATGGAAAGCTTGTACCATCACCTAGCTCTCCTGTTCTTTCTTTTCCTTGTTGTTAAAATTCTGTTCCGTCAAAAGCAAAACCTGCCCCCTA GCCCTTTTGCTCTTCCAATTATCGGCCACCTACACCTCTTTAAGCATCCCCAGTCACTACAGACTCTCTCATCACAATATGGTCCGATCCTGTTCCTCAA ATTTGGTTGGAGGTCTACCCTTGTGGTGTCTTCACCATCTGCTGTTGAAGAATGTTTCACCAAGAATGACATAATATTTGCAAACAGACCCCAGTCCATG GCTGGGGATCACTTGACCTACAATTATACTGGGTTTGTGTGGGCACCTTATGGTCATCTTTGGCGAAGCCTACGCCGTATTTCTGTGATTGAATTATTCG CATCAAAGAGCCTCCAAAAGTCTTCAATTATTCGTGAGGAAGAAGTTTGCTCCCTGCTTCGCAGACTGTTGAAAGCCAGAAATGGTGTTACAGCGAAGGT GGACTTAAAGTTTTTGTTTTCTCTTCTAACATGTAATGTCATGATGAGACTGGCTGCTGGAAAGCCTTGCATCGATGAGGAAGTTGCTGGTACAAAGGTG GAGAAACAATTATGTCAAGAATTTAAGGAGAGATTTTCTCCTGGCCTGGGGATGAATATCTGTGATTTTATCCCGATTTTAAGGTTGATTGGTTACAAAG GGCTAGAGAAAAGTATGAAAAAACTGCAGAGTAGTAGAGATAAGTATTTGCAGCATCTGATAGATGAAATTCGGATGAGGAGAACAAGTTCTTCCTCCAA AACTGCTGAACAATGGAAAAGAGAAGGGAAGAGCTCAGTGATTGAAACTTTCCTGTCTCTGCAAGATTTGGAACCTGAATTTTTGACGGATACAGTTATC AAAAATGTTCTAGTGATGATGTTTGTTGCTGGCACGGAAACATCAGCAGTTACTTTGGAGTGGGCAATGGCACTCCTCTTGAATCATCCAAAAGCAATGC AAAAGCTGAAAGCTGAGATTGATGAGCATGTTGGGCATGGGCGTTTGCTGAACGAGTCAAATATTGTCAAGCTTCCCTACCTTAGGTGCGTCATAAAGGA GACGCTTAGATTATATCCTCCAGCTCCCCTTTTGCTGCCTCATTTTTCATCTGGAGCTTGCACTGTTGGGGGATTTGATATACCGCAAGGCACAACGCTG GTGGTGAATGCTTGGGCCATGCATAGAGATCCCAAACTCTGGGAAGAGTCCAATGAATTCAAGCCTGAAAGATTTGAGGCTGGTTTAGGAGAGCAAGAAG GTTTCAAATATATTCCGTTTGGAACCGGGAGGAGAGTTTGCCCAGGTGCTAGCATGGGTTTGCAGATGGTTTCAATTGCCTTAGGTGCTCTCGTCCAGTG CTTTGAGTGGGATAAGGTTGCACCGGTGGAGGACATGAGCCATAGTCCTGGAATTAGTTTGTCTAAAGTCAAGCCATTGGAAGCATTGTGCTGTCCACGC GGTGATTTGACTACCCTCCTTTACCATCCTTAG
AA sequence Show only first row Show all	>Potri.002G121900.1 pacid=42779577 polypeptide=Potri.002G121900.1.p locus=Potri.002G121900 ID=Potri.002G121900.1.v4.1 annot-version=v4.1 MFEMESLYHHLALLFFLFLVVKILFRQKQNLPPSPFALPIIGHLHLFKHPQSLQTLSSQYGPILFLKFGWRSTLVVSSPSAVEECFTKNDIIFANRPQSM AGDHLTYNYTGFVWAPYGHLWRSLRRISVIELFASKSLQKSSIIREEEVCSLLRRLLKARNGVTAKVDLKFLFSLLTCNVMMRLAAGKPCIDEEVAGTKV EKQLCQEFKERFSPGLGMNICDFIPILRLIGYKGLEKSMKKLQSSRDKYLQHLIDEIRMRRTSSSSKTAEQWKREGKSSVIETFLSLQDLEPEFLTDTVI KNVLVMMFVAGTETSAVTLEWAMALLLNHPKAMQKLKAEIDEHVGHGRLLNESNIVKLPYLRCVIKETLRLYPPAPLLLPHFSSGACTVGGFDIPQGTTL VVNAWAMHRDPKLWEESNEFKPERFEAGLGEQEGFKYIPFGTGRRVCPGASMGLQMVSIALGALVQCFEWDKVAPVEDMSHSPGISLSKVKPLEALCCPR GDLTTLLYHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.002G121900 [exp]	0	1	Pt-IFS1.53
AT2G36430			Plant protein of unknown funct...		Potri.005G116100 [exp]	8.12	0.8657
AT5G01450			RING/U-box superfamily protein...		Potri.016G116300 [exp]	9.16	0.8536
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	11.66	0.8458
AT1G48210			Protein kinase superfamily pro...		Potri.010G001500 [exp]	16.03	0.8660
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Potri.019G054300 [exp]	22.44	0.8545
AT1G78140			S-adenosyl-L-methionine-depend...		Potri.002G095100 [exp]	22.58	0.8621
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127400 [exp]	23.34	0.8079
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.006G007600 [exp]	28.39	0.8369
AT4G14090			UDP-Glycosyltransferase superf...		Potri.004G083700 [exp]	38.40	0.8613
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.004G199600 [exp]	39.34	0.8267	Pt-NIT2.2

Compare expression of checked genes

Potri.002G121900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.