Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24210 185 / 1e-60 SLY1 SLEEPY1, F-box family protein (.1) AT5G48170 66 / 1e-13 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1) AT1G21760 44 / 2e-05 ATFBP7 F-box protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022100 [exp] 285 / 2e-99 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.014G165700 [exp] 66 / 7e-14 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.002G054500 [exp] 57 / 1e-09 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.004G076800 [exp] 45 / 7e-06 AT5G04010 122 / 9e-33 F-box family protein (.1) Potri.005G208200 [exp] 43 / 4e-05 AT2G27310 130 / 3e-34 F-box family protein (.1) Potri.002G082500 [exp] 43 / 6e-05 AT1G21760 474 / 7e-170 F-box protein 7 (.1) Potri.006G044801 [exp] 42 / 6e-05 AT5G04010 114 / 8e-30 F-box family protein (.1) Potri.005G178600 [exp] 42 / 9e-05 AT1G21760 479 / 6e-172 F-box protein 7 (.1) Potri.004G119500 [exp] 42 / 0.0001 AT5G39250 347 / 8e-122 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042637 [exp] 258 / 9e-89 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1) Lus10012335 [exp] 66 / 6e-14 AT5G48170 145 / 6e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10001172 [exp] 64 / 8e-13 AT5G48170 164 / 2e-52 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10006381 [exp] 61 / 7e-12 AT5G48170 140 / 5e-43 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10028024 [exp] 46 / 4e-06 AT2G27310 158 / 4e-45 F-box family protein (.1) Lus10042716 [exp] 45 / 1e-05 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2) Lus10003731 [exp] 45 / 2e-05 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10029676 [exp] 43 / 7e-05 AT1G21760 444 / 5e-156 F-box protein 7 (.1) Lus10031031 [exp] 39 / 0.001 AT5G04010 106 / 4e-27 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.002G122300.1 pacid=42778490 polypeptide=Potri.002G122300.1.p locus=Potri.002G122300 ID=Potri.002G122300.1.v4.1 annot-version=v4.1 ATGAAGCGCCCACTCGACACCGATCCCGGAAACCAAAACAAAATTGACATAAAAATGAAGAAGAAGAGGTACCAAGAAGACGAAAACAAGGAAGAAATAG AATCTGCGGTCAATACAGGATCTGGGTTTATGAATTTAGACGAGAATTTACTTTTTGAGGTGTTGAAGCACGTGGACGCGAGGACTTTGGGTAGTGCAGC GTGTGTGAGCAAGCAGTGGCACCGGACAGTACAGGATGAGAGGTTATGGGAGCTGGTCTGTACAAAACACTGGGGTAACATGGGCTGTGGTAATCAACAA ATGAGATCTGTTGTTTTAGCTCTTGGTGGGTTTCGTCGACTTCACTCCCAGTACCTCTGGCCTCTATCAAAGCCACAGTCAAATTCCGCAGGCTCTGCTT CAACTTCTTCTTCTGCCTGGAATCCGTTCTCGCCTATGATTGGAAATAAGCCACCGGCTAGGTGGGGGAAGGATGAGGTGCATCTGTCTTTGTCCTTGCT TTCAATTCGGTATTATGAGAAGATGAATTTTAGCAACAGAGGGAGATGA
AA sequence Show only first row Show all	>Potri.002G122300.1 pacid=42778490 polypeptide=Potri.002G122300.1.p locus=Potri.002G122300 ID=Potri.002G122300.1.v4.1 annot-version=v4.1 MKRPLDTDPGNQNKIDIKMKKKRYQEDENKEEIESAVNTGSGFMNLDENLLFEVLKHVDARTLGSAACVSKQWHRTVQDERLWELVCTKHWGNMGCGNQQ MRSVVLALGGFRRLHSQYLWPLSKPQSNSAGSASTSSSAWNPFSPMIGNKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.002G122300 [exp]	0	1
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.004G004900 [exp]	1.00	0.6743
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.008G161700 [exp]	8.94	0.5946
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.002G046900 [exp]	16.88	0.5893
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.007G012200 [exp]	22.84	0.6130
AT3G47160			RING/U-box superfamily protein...		Potri.001G250800 [exp]	24.00	0.6310
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Potri.002G123100 [exp]	34.20	0.5818
AT4G32860			unknown protein		Potri.006G236700 [exp]	43.71	0.5671
AT5G66440			unknown protein		Potri.007G021500 [exp]	59.88	0.5852
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.002G148600 [exp]	61.18	0.5729
AT2G26520			unknown protein		Potri.004G144400 [exp]	84.23	0.5759

Compare expression of checked genes

Potri.002G122300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.