Plant FIBer expression Database

Potri.002G122400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G23270 37 / 9e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G022300
[exp]
102 / 3e-30 ND /
Potri.014G022200
[exp]
42 / 2e-06 ND /
Potri.005G142900
[exp]
41 / 4e-06 AT4G37290 44 / 4e-07 unknown protein
Potri.007G049500
[exp]
40 / 9e-06 AT4G37290 48 / 1e-08 unknown protein
Potri.016G015600
[exp]
36 / 0.0004 AT4G37290 45 / 2e-07 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G122400.1 pacid=42776882 polypeptide=Potri.002G122400.1.p locus=Potri.002G122400 ID=Potri.002G122400.1.v4.1 annot-version=v4.1
ATGGCAAGACTTTCCACGTCTTCGATCTTCTTCGTCGGGCCTCTCTTTGTATGCTCTCTGCTTTTGATCATCTCAGAAGCTCGTCCTCTCGGTGTGGTAG
GGTCACATGGCTCTATAAACAATAGGATTGGTACAATATTCTCTGACGAGATGAACATTGAAGGAATTAAAAACAGCGGCCCAAGCGAAGGAGGGAGGGG
CCATGCGTTCAAGATTGTCCACTCTTGA
AA sequence
>Potri.002G122400.1 pacid=42776882 polypeptide=Potri.002G122400.1.p locus=Potri.002G122400 ID=Potri.002G122400.1.v4.1 annot-version=v4.1
MARLSTSSIFFVGPLFVCSLLLIISEARPLGVVGSHGSINNRIGTIFSDEMNIEGIKNSGPSEGGRGHAFKIVHS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G122400
[exp]
0 1
AT2G26110 Protein of unknown function (D... Potri.001G008080
[exp]
1.73 0.9755
AT1G18350 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND ... Potri.008G183700
[exp]
2.00 0.9699
AT5G42380 CML39, CML37 CALMODULIN LIKE 39, calmodulin... Potri.002G132500
[exp]
2.82 0.9719
AT1G03220 Eukaryotic aspartyl protease f... Potri.013G070300
[exp]
3.16 0.9639
AT5G42650 CYP74A, AOS, DD... DELAYED DEHISCENCE 2, CYTOCHRO... Potri.014G038700
[exp]
3.16 0.9532
AT1G03220 Eukaryotic aspartyl protease f... Potri.013G070325
[exp]
3.46 0.9626
AT1G63410 Protein of unknown function (D... Potri.001G106300
[exp]
4.89 0.9563
AT3G10080 RmlC-like cupins superfamily p... Potri.010G238100
[exp]
6.48 0.9575
Potri.002G122200
[exp]
6.48 0.9374
AT5G07010 ATST2A ARABIDOPSIS THALIANA SULFOTRAN... Potri.001G036600
[exp]
9.16 0.9455

Potri.002G122400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.