Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37280 147 / 2e-43 MRG family protein (.1) AT1G02740 144 / 2e-42 MRG family protein (.1) AT4G17230 52 / 6e-08 GRAS SCL13 SCARECROW-like 13 (.1) AT1G50600 44 / 4e-05 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022400 [exp] 220 / 5e-72 AT1G02740 314 / 2e-106 MRG family protein (.1) Potri.007G049300 [exp] 160 / 9e-49 AT4G37280 417 / 2e-147 MRG family protein (.1) Potri.006G016200 [exp] 74 / 2e-15 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.016G009700 [exp] 72 / 5e-15 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.014G164400 [exp] 51 / 1e-07 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 42 / 8e-05 AT1G50600 637 / 0.0 scarecrow-like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011511 [exp] 166 / 5e-51 AT4G37280 449 / 5e-160 MRG family protein (.1) Lus10019312 [exp] 162 / 9e-51 AT4G37280 283 / 4e-96 MRG family protein (.1) Lus10006369 [exp] 54 / 9e-09 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10017554 [exp] 53 / 3e-08 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10000539 [exp] 50 / 2e-07 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10003772 [exp] 47 / 2e-06 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 45 / 9e-06 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 45 / 2e-05 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05712 [poplar] [flax] MRG MRG
Representative CDS sequence Show only first row Show all	>Potri.002G122500.1 pacid=42779961 polypeptide=Potri.002G122500.1.p locus=Potri.002G122500 ID=Potri.002G122500.1.v4.1 annot-version=v4.1 ATGACTCAAGTTGCTAAGTCATGCAATGTGCCATTTGAGTTCCATGGTGTTGCCATGGATGGTTGTGAGGTTCAACTGGAACATCTTAGGGTTCAACCTG GGAAAGCTCTCATCAAACTCCCTCTCACCCCAAATATCCAAGACATATGCACGAAGTATTGCAAGTATAGGTCCCAAAACTATGTCATGATATTTGAATC AACCACTGAAATTATGAAAGGTTTATGTTTTTACTTTGACAAAGCCTTGCCAGTGATGCTTCTGTATAAAAGTGAGCGCCATCAGTATGCTGATGCAATT AGAGACAATGTTTCTCCCTCGATGGTATATGGCGCTGAGCATCTATTACGCCTCTTTGTTAAGTTGCCTGAGTTATTGGCCCATGCAAACAACCAAGAGG AGACACTCACAGGGTTGCACAGAAAATTAGTTGACATTCTGAGGCATTCCACCGCGCTGATACATTTTCTACAGAAGAATCAGAGTGCCTTTTATCTTTC TACAAACCATGCCCCAGAAGATTCTGAAGGAAGCACCGACAAACAAGACCACTAG
AA sequence Show only first row Show all	>Potri.002G122500.1 pacid=42779961 polypeptide=Potri.002G122500.1.p locus=Potri.002G122500 ID=Potri.002G122500.1.v4.1 annot-version=v4.1 MTQVAKSCNVPFEFHGVAMDGCEVQLEHLRVQPGKALIKLPLTPNIQDICTKYCKYRSQNYVMIFESTTEIMKGLCFYFDKALPVMLLYKSERHQYADAI RDNVSPSMVYGAEHLLRLFVKLPELLAHANNQEETLTGLHRKLVDILRHSTALIHFLQKNQSAFYLSTNHAPEDSEGSTDKQDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37280			MRG family protein (.1)		Potri.002G122500 [exp]	0	1
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.014G106700 [exp]	2.00	1.0000
					Potri.006G076350 [exp]	3.46	1.0000
AT1G47670			Transmembrane amino acid trans...		Potri.004G181000 [exp]	4.24	0.9937
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Potri.009G145100 [exp]	4.69	0.9482
					Potri.010G120401 [exp]	6.00	0.9729
					Potri.003G010664 [exp]	9.16	0.9269
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.002G006700 [exp]	9.32	0.8515
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Potri.010G142300 [exp]	16.61	0.7853
AT1G58170			Disease resistance-responsive ...		Potri.016G061000 [exp]	20.32	0.7424
AT3G50610			unknown protein		Potri.007G041601 [exp]	20.59	0.6096

Compare expression of checked genes

Potri.002G122500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.