Plant FIBer expression Database

Potri.002G122800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G048400
[exp]
42 / 1e-06 AT5G67265 56 / 7e-12 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042633
[exp]
72 / 5e-18 AT5G67265 45 / 2e-07 unknown protein
Lus10001127
[exp]
69 / 5e-17 ND 45 / 1e-07
PFAM info
Representative CDS sequence
>Potri.002G122800.2 pacid=42779581 polypeptide=Potri.002G122800.2.p locus=Potri.002G122800 ID=Potri.002G122800.2.v4.1 annot-version=v4.1
ATGAAGACACAGCAGGAGACTGAAAGGATAAACGAAGAAGGTGAAGCTGAAACCAGGGTGGAGACTGTCGATCACCGGAAATCAGCGGGGCAAGGCGAAC
CCACCGATGAGAAAGTGGGGGTGGTTCATCTTAAGCGCAACACGAGGGATTCTGGCAGTGGTGGTGGAATTTTGTCTAGCGCAGCTGCTGCAGTGACTAA
CACCTTCAAGTCTGCAAAGGATGCCATCATGGGCGGTCGTGGCAAAGATAACACCACCAAATGA
AA sequence
>Potri.002G122800.2 pacid=42779581 polypeptide=Potri.002G122800.2.p locus=Potri.002G122800 ID=Potri.002G122800.2.v4.1 annot-version=v4.1
MKTQQETERINEEGEAETRVETVDHRKSAGQGEPTDEKVGVVHLKRNTRDSGSGGGILSSAAAAVTNTFKSAKDAIMGGRGKDNTTK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G67265 unknown protein Potri.002G122800
[exp]
0 1
AT4G31830 unknown protein Potri.006G183800
[exp]
1.73 0.8934
AT2G21490 LEA dehydrin LEA (.1) Potri.004G158500
[exp]
3.74 0.8862
AT3G52850 VSR1;1, GFS1, B... VACUOLAR SORTING RECEPTOR 1;1,... Potri.016G137300
[exp]
3.87 0.8545
AT3G48520 CYP94B3 cytochrome P450, family 94, su... Potri.005G220700
[exp]
6.24 0.8776 Pt-CYP94.7
AT3G52850 VSR1;1, GFS1, B... VACUOLAR SORTING RECEPTOR 1;1,... Potri.016G137350
[exp]
7.48 0.8363
AT1G43910 P-loop containing nucleoside t... Potri.007G019600
[exp]
7.74 0.8656
AT4G23100 ATECS1, CAD2, G... ROOT MERISTEMLESS 1, PHYTOALEX... Potri.001G104500
[exp]
7.81 0.7860
AT3G20250 APUM5 pumilio 5 (.1) Potri.008G004300
[exp]
9.48 0.8389
AT4G26740 CLO1, ATPXG1, A... CALEOSIN1, ARABIDOPSIS THALIAN... Potri.010G066600
[exp]
14.00 0.7930 Pt-GMPM13.1
AT4G00900 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDO... Potri.014G101900
[exp]
14.07 0.8340 Pt-ECA2.1

Potri.002G122800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.