Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47056 650 / 0 VFB1 VIER F-box proteine 1 (.1) AT4G07400 637 / 0 VFB3 VIER F-box proteine 3 (.1) AT5G67250 556 / 0 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT3G50080 515 / 1e-179 VFB2 VIER F-box proteine 2 (.1) AT4G15475 108 / 7e-25 F-box/RNI-like superfamily protein (.1) AT5G27920 88 / 4e-18 F-box family protein (.1) AT2G25490 79 / 3e-15 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 77 / 9e-15 RNI-like superfamily protein (.1) AT5G25350 75 / 5e-14 EBF2 EIN3-binding F box protein 2 (.1) AT5G01720 74 / 8e-14 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G023500 [exp] 919 / 0 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.007G048101 [exp] 566 / 0 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.005G141800 [exp] 550 / 0 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.006G081600 [exp] 343 / 1e-111 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1) Potri.006G254100 [exp] 93 / 9e-20 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 84 / 6e-17 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.017G056400 [exp] 82 / 2e-16 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.005G088800 [exp] 77 / 7e-15 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 76 / 1e-14 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018737 [exp] 793 / 0 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10011506 [exp] 540 / 0 AT5G67250 566 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10019319 [exp] 481 / 1e-166 AT5G67250 505 / 3e-176 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10024798 [exp] 226 / 3e-71 AT1G47056 179 / 4e-54 VIER F-box proteine 1 (.1) Lus10024799 [exp] 120 / 3e-32 AT4G07400 93 / 3e-23 VIER F-box proteine 3 (.1) Lus10012764 [exp] 119 / 5e-28 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 106 / 8e-24 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10036412 [exp] 81 / 3e-16 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10041087 [exp] 79 / 1e-15 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10002913 [exp] 79 / 2e-15 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.002G123100.1 pacid=42779778 polypeptide=Potri.002G123100.1.p locus=Potri.002G123100 ID=Potri.002G123100.1.v4.1 annot-version=v4.1 ATGGGCCAGACAACTTCGACGGCTTTAATCACAAGCCGTCGAGACTCAAATCTCAGCAGCCAGCGCTCAAAATCCAAATTCACTGTCCCCATCATTCCGA TGCAAGTAGAAGAACAAACCGAATACGTGCTCGTGGAAGCACCTGATTATATCTCAGATCTTCCCGATGAATGCTTAGCTTGTATTTTCCAGTCACTTAG TTCCGGCGACCGGAAAAGCTGCTCTTTAGTTTGTCGGAGATGGCTAAGAATCGAAGGACAGAGCCGTCACCGACTCTCTCTCAACGCCCAATCAGATCTC CTTCCTTTCGTAACATCTCTCTTCTCTCGCTTCGACGCTGTAACTAAGCTCGCTCTCAAATGTGACCGTAGATCCGTTAGCATCGGCGACGAGGCGCTAG TTGCAATATCTATTCGTTGCCGTAACCTCACGCGCCTCAAGCTCCGCGCATGTAGAGAAATCACAGACGCAGGCATGGCAGCTTTCGCTAAAAATTGTAA AGCATTGAAGAAGTTTTCGTGTGGATCTTGCGCTTTCGGAGCCAAAGGAATGAACGCGATGCTTGATAATTGCGCGTCGCTCGAGGATTTATCGGTAAAA CGGCTTCGAGGAATTACGGATGGCGCGACGGCTGAGCCGATTGGACCGGGTTTAGCTGCGGCTTCACTTAAAACGATTTGCTTAAAGGAACTTTACAATG GACAGTGTTTTGGCCCGCTTATAATCGGGTCAAAGAATTTGAAAACTTTGAAGCTTTTTAGATGCTCTGGCGATTGGGATAAGCTTCTTCAAGTTATTGC GGATCGGGTTACTGGTATGGTTGAGATCCATTTAGAGAGGCTCCAAGTTAGCGATACTGGCCTTGTAGCCATCTCTAATTGTTTGAATTTAGAGATTTTG CATCTAGTTAAAACCCCGGAGTGTACTGATATCGGACTTGTTTCCATTGCGGAGCGATGTAGGTTACTAAGAAAGCTTCATATTGATGGTTGGAAGGCAC ATCGGATCGGTGATGATGGGTTAATGGCAGTTGCCAAGTATTGTCTTAATTTGCAAGAGTTGGTGCTGATCGGGGTGAATCCTACACAGATTAGTTTAGA ATTGTTAGCTTCAAATTGTCAGAATCTAGAGCGGCTAGCATTGTGTGGGAGTGATACTGTTGGTGACGTGGAGATTTCTTGTATTGCAGCCAAATGTGTG GCATTGAAAAAGCTCTGTATTAAGAGTTGTCCTGTATCGGATCATGGATTGGAAGCGCTTGCAAATGGGTGCCCGAATTTGGTTAAAGTGAAGGTGAAGA AGTGTAGAGCAGTTACTTATGAGTGTGCTGATTTGTTGAGAATGAAGAGGGGATCTTTGGCGGTCAATTTGGATAGTGGGGAACCCGAGCATCAGGATGC CAGTGCTAGTGATGGTGGGGTGCAGGAAAATGTAGATGAGTTTCATCCAGTCCCTAATCAAATGCCGCTGCCTAGCATTGCACCGAGCAGTACTGGACGA TCAACTTCTTTCAAGTCAAGATTTGGGCTTTGGAGTGGGAAAAGTTTCGCGGCTTGCACATTTAGAGGATGGTCGAGTGGTAATAGCAGTTCTCGAGGAT AA
AA sequence Show only first row Show all	>Potri.002G123100.1 pacid=42779778 polypeptide=Potri.002G123100.1.p locus=Potri.002G123100 ID=Potri.002G123100.1.v4.1 annot-version=v4.1 MGQTTSTALITSRRDSNLSSQRSKSKFTVPIIPMQVEEQTEYVLVEAPDYISDLPDECLACIFQSLSSGDRKSCSLVCRRWLRIEGQSRHRLSLNAQSDL LPFVTSLFSRFDAVTKLALKCDRRSVSIGDEALVAISIRCRNLTRLKLRACREITDAGMAAFAKNCKALKKFSCGSCAFGAKGMNAMLDNCASLEDLSVK RLRGITDGATAEPIGPGLAAASLKTICLKELYNGQCFGPLIIGSKNLKTLKLFRCSGDWDKLLQVIADRVTGMVEIHLERLQVSDTGLVAISNCLNLEIL HLVKTPECTDIGLVSIAERCRLLRKLHIDGWKAHRIGDDGLMAVAKYCLNLQELVLIGVNPTQISLELLASNCQNLERLALCGSDTVGDVEISCIAAKCV ALKKLCIKSCPVSDHGLEALANGCPNLVKVKVKKCRAVTYECADLLRMKRGSLAVNLDSGEPEHQDASASDGGVQENVDEFHPVPNQMPLPSIAPSSTGR STSFKSRFGLWSGKSFAACTFRGWSSGNSSSRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Potri.002G123100 [exp]	0	1
AT4G13530			unknown protein		Potri.013G099200 [exp]	3.74	0.6971
AT4G30820			cyclin-dependent kinase-activa...		Potri.018G103200 [exp]	7.34	0.6732
AT4G08330			unknown protein		Potri.002G083600 [exp]	11.22	0.6424
AT4G29850			Eukaryotic protein of unknown ...		Potri.006G072000 [exp]	13.60	0.6573
AT3G08890			Protein of unknown function, D...		Potri.016G125300 [exp]	24.49	0.6022
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.011G154800 [exp]	26.75	0.6616	LSD1.2
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.014G168900 [exp]	30.88	0.6486
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.002G122300 [exp]	34.20	0.5818
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.016G138900 [exp]	40.02	0.6166
AT4G35980			unknown protein		Potri.005G111900 [exp]	41.71	0.6131

Compare expression of checked genes

Potri.002G123100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.