Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34150 185 / 3e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G63220 57 / 5e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G55470 51 / 7e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G47710 45 / 7e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G03370 46 / 2e-05 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT1G05500 45 / 2e-05 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G05330 44 / 8e-05 AGD13 ARF-GAP domain 13 (.1) AT5G11100 43 / 0.0001 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 43 / 0.0002 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301900 [exp] 213 / 2e-69 AT4G34150 204 / 8e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G097900 [exp] 204 / 2e-65 AT4G34150 213 / 5e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G155600 [exp] 57 / 3e-10 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203000 [exp] 56 / 2e-09 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.012G056000 [exp] 52 / 1e-07 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.015G046700 [exp] 51 / 3e-07 AT3G18370 968 / 0.0 C2 domain-containing protein (.1) Potri.006G063900 [exp] 50 / 9e-07 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 47 / 8e-06 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 46 / 1e-05 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027875 [exp] 201 / 2e-64 AT4G34150 246 / 3e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002825 [exp] 190 / 6e-60 AT4G34150 243 / 5e-81 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014088 [exp] 173 / 7e-53 AT4G34150 202 / 4e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019826 [exp] 174 / 1e-52 AT4G34150 191 / 2e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10029565 [exp] 63 / 2e-12 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002235 [exp] 62 / 5e-12 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040291 [exp] 54 / 8e-09 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009032 [exp] 51 / 5e-07 AT3G18370 907 / 0.0 C2 domain-containing protein (.1) Lus10039113 [exp] 46 / 5e-06 AT5G47710 239 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10006193 [exp] 47 / 6e-06 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.002G123200.1 pacid=42778470 polypeptide=Potri.002G123200.1.p locus=Potri.002G123200 ID=Potri.002G123200.1.v4.1 annot-version=v4.1 ATGGCGATCTGTGGAATCCAAGGCTTTCCTCTTGAGGTCACTGTCGTTGCTTGTTACAATTTGGAGGACAAGGAATGGATATCAAGACAAGACCCATATG TTAGTGTTGAGTATGGAAACACCAAGTACCGAACCAAAACGTGCACAGATGGAGGCAGGAACCCCGTTTTTCAAGAAAAGTTCATTTTCACACTTGTTGA AGGCCTCCAGGAATTGAGCGTTGTGGTTTGGAACAGCCACACCCTCTCTGCTGATGAGCATATTGGCACCGGAAGAATCCAGCTCCATAAAGCCCTTTCC CAAGGTTTTGATGATGCTTCCTGGCCCATACAGAGCAAAACTGGCAGGCATTCAGGGGAAGTGCGGCTTATGTTACACTACTCAAATCCCAATCAACATA AAGGGAAAATGACTCCATCAGATTTAGGATCAAAATATGCATCGCCACCACTGAACCAGGTTCTGCCATACCCTTCCATGCCACCAGCACCCGCTGCTCT TTACCCTGCTACAACTACCTACTCCTCCCCTTCTCCGTACATGGGGTACTCTCCTAACCCTGCGAGCTATCCGCCACCCCCTCACGTTCCTCCTCCAGCT GGCCGCTACCCTCCGCAAGCGTGTTTTCCTGCAGCCTACCCTCCCCAAGCATATCCACCTGCTCCTCAGCCCTCAACGTACTATCCTACAGGTGCATCCG GGGTTTATCCACCACCACCACCACCAGGAACATATCCACCGCCGCCGTACTGA
AA sequence Show only first row Show all	>Potri.002G123200.1 pacid=42778470 polypeptide=Potri.002G123200.1.p locus=Potri.002G123200 ID=Potri.002G123200.1.v4.1 annot-version=v4.1 MAICGIQGFPLEVTVVACYNLEDKEWISRQDPYVSVEYGNTKYRTKTCTDGGRNPVFQEKFIFTLVEGLQELSVVVWNSHTLSADEHIGTGRIQLHKALS QGFDDASWPIQSKTGRHSGEVRLMLHYSNPNQHKGKMTPSDLGSKYASPPLNQVLPYPSMPPAPAALYPATTTYSSPSPYMGYSPNPASYPPPPHVPPPA GRYPPQACFPAAYPPQAYPPAPQPSTYYPTGASGVYPPPPPPGTYPPPPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34150			Calcium-dependent lipid-bindin...		Potri.002G123200 [exp]	0	1
AT3G59940			Galactose oxidase/kelch repeat...		Potri.007G147000 [exp]	1.00	0.8335
AT1G08590			Leucine-rich receptor-like pro...		Potri.019G021700 [exp]	5.19	0.7764
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.012G037300 [exp]	6.92	0.7306
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.006G072400 [exp]	11.74	0.6861
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.017G098700 [exp]	12.88	0.8228
AT3G06778			Chaperone DnaJ-domain superfam...		Potri.010G005700 [exp]	21.63	0.6443
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Potri.014G168100 [exp]	37.81	0.7005
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	71.83	0.6645
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	72.37	0.6622
AT1G75090			DNA glycosylase superfamily pr...		Potri.002G133800 [exp]	116.04	0.6694

Compare expression of checked genes

Potri.002G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.