Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24240 275 / 3e-90 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT4G31550 181 / 3e-54 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G30590 153 / 5e-43 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT2G23320 152 / 5e-43 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT3G04670 147 / 3e-41 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT5G28650 145 / 2e-40 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT2G24570 144 / 3e-40 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT1G29280 107 / 7e-27 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT2G34830 102 / 6e-24 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 99 / 5e-23 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024200 [exp] 484 / 2e-172 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.007G047400 [exp] 276 / 3e-91 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.005G141400 [exp] 271 / 3e-89 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.005G219500 [exp] 172 / 2e-50 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.018G139300 [exp] 169 / 1e-49 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.002G043500 [exp] 168 / 7e-49 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.006G072400 [exp] 145 / 6e-41 AT4G31550 297 / 3e-100 WRKY DNA-binding protein 11 (.1.2) Potri.013G042600 [exp] 145 / 2e-40 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2) Potri.005G055300 [exp] 142 / 3e-39 AT3G04670 361 / 1e-124 WRKY DNA-binding protein 39 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010053 [exp] 330 / 5e-112 AT4G24240 303 / 1e-101 WRKY DNA-binding protein 7 (.1) Lus10006261 [exp] 244 / 2e-78 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2) Lus10041600 [exp] 244 / 3e-78 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10033857 [exp] 165 / 1e-47 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10014745 [exp] 160 / 5e-46 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10018776 [exp] 147 / 5e-41 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10024864 [exp] 146 / 1e-40 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10042538 [exp] 145 / 2e-40 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10021999 [exp] 142 / 2e-39 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10026936 [exp] 140 / 2e-38 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain CL0274 [poplar] [flax] PF10533 [poplar] [flax] Plant_zn_clust Plant zinc cluster domain
Representative CDS sequence Show only first row Show all	>Potri.002G123300.1 pacid=42778130 polypeptide=Potri.002G123300.1.p locus=Potri.002G123300 ID=Potri.002G123300.1.v4.1 annot-version=v4.1 ATGGCTGTGGAGCTTATGATGGGGTATTCTGGTGATTGTTTTGCTACAAAAATGCAAGAGAATGCCGTGAGGGAAGCGGCAGCTTCTGGGATACAAAGCG TCGAGGAAGTCATAAAATTGCTCAAACAAAATCAACTTGAACAGCAACACTACCAAGAGTTATCTGCAGCCTCTTCAAGTTCCAATCTTGGCACGGATAA TATCATGACTGTTACTGATATGGCGGTGAACAACTTCAAAAAGGTCATCTCTTTACTGGGTCGCACCACAAGAACTGGCCACGCTCGATTTAGAAGAGCT CCTGATACCCCCCCTACTCAACAACAAATACGAGAAGAACCAGAATCGCAACAAGAAAAACGGCAAGTTCAAGAGCCTGGACCATCTGTTCGAGCAATTA ATTCGCAGCCAACAGAGCAAGCCTCTGCTTTTAGAGTTTATCAACCGACCCCAATTCATCGTCTCCCTCCTTTACCTCACAATCAGCAGCAAAAGAGCCC TCTTCTGGTTACAAAAAAAGGGTTGTCAGATCGGAATGAAATTCCTACCACAATCAATTTCTCTAATTCGCCATCAATTTCTTCTGCCACTTCTTTCATG TCTTCTCTTACAGGGGAAACTGATGGCTTCCAGCGTTCTATGCCTTCTAGGTTTCATTTTACCCAACCTTCTGCTGGTAAACCCCCTTTGTCCTCTTCTT CTCTTAAGAGAAAGTGCAACTCCATGGATGATGCTGCTCTCAAGTGTGGCTCTTCTTCTGGTCGCTGCCATTGCTCCAAGAAAAGCAGAAAATCAAGGGC TAAAAGAGTGGTCAGAGTTCCTGCAATTAGCAATAAGATGGCTGATATTCCACCTGATGATTATTCCTGGAGAAAGTATGGTCAAAAGCCCATCAAAGGC TCTCCTCATCCAAGGGGATATTACAAGTGCAGCAGCGTGAGAGGATGTCCAGCACGCAAACATGTGGAGAGAGCTCTAGATGACTCCATGATGCTTATTG TGACCTATGAAGGGGAACACAATCACTCTCATCCATTCGATGATGCACCTGCTGCTCTCGTCCCTGAATCATCTTAA
AA sequence Show only first row Show all	>Potri.002G123300.1 pacid=42778130 polypeptide=Potri.002G123300.1.p locus=Potri.002G123300 ID=Potri.002G123300.1.v4.1 annot-version=v4.1 MAVELMMGYSGDCFATKMQENAVREAAASGIQSVEEVIKLLKQNQLEQQHYQELSAASSSSNLGTDNIMTVTDMAVNNFKKVISLLGRTTRTGHARFRRA PDTPPTQQQIREEPESQQEKRQVQEPGPSVRAINSQPTEQASAFRVYQPTPIHRLPPLPHNQQQKSPLLVTKKGLSDRNEIPTTINFSNSPSISSATSFM SSLTGETDGFQRSMPSRFHFTQPSAGKPPLSSSSLKRKCNSMDDAALKCGSSSGRCHCSKKSRKSRAKRVVRVPAISNKMADIPPDDYSWRKYGQKPIKG SPHPRGYYKCSSVRGCPARKHVERALDDSMMLIVTYEGEHNHSHPFDDAPAALVPESS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.002G123300 [exp]	0	1
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.014G024200 [exp]	8.94	0.6002
AT3G22540			Protein of unknown function (D...		Potri.008G154500 [exp]	15.93	0.6416
AT2G19940			oxidoreductases, acting on the...		Potri.004G145700 [exp]	19.79	0.6353
AT1G34360			translation initiation factor ...		Potri.009G137000 [exp]	20.97	0.6064
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.004G205000 [exp]	25.57	0.6184
AT3G28410			F-box/RNI-like superfamily pro...		Potri.017G146400 [exp]	25.78	0.6186
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.018G021900 [exp]	30.51	0.6116
AT1G28280			VQ motif-containing protein (....		Potri.011G053700 [exp]	31.44	0.5671
					Potri.006G031500 [exp]	35.32	0.5711
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	35.32	0.5817

Compare expression of checked genes

Potri.002G123300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.