Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47820 1638 / 0 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 1234 / 0 KICP-02 ATP binding microtubule motor family protein (.1) AT5G60930 912 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 254 / 3e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 243 / 2e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 241 / 7e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 240 / 1e-64 POK2 phragmoplast orienting kinesin 2 (.1) AT2G37420 236 / 3e-64 ATP binding microtubule motor family protein (.1) AT3G44050 237 / 4e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G17360 234 / 1e-62 POK1 phragmoplast orienting kinesin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024700 [exp] 1957 / 0 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 1493 / 0 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G106000 [exp] 952 / 0 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 841 / 0 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G077800 [exp] 249 / 9e-69 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 249 / 3e-68 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 246 / 1e-67 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 246 / 1e-67 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 242 / 5e-66 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018731 [exp] 1747 / 0 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024805 [exp] 1747 / 0 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 1697 / 0 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000762 [exp] 572 / 0 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 564 / 0 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018120 [exp] 249 / 2e-68 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 248 / 6e-68 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 246 / 3e-67 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10009073 [exp] 246 / 4e-67 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012048 [exp] 248 / 7e-67 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.002G123500.4 pacid=42776719 polypeptide=Potri.002G123500.4.p locus=Potri.002G123500 ID=Potri.002G123500.4.v4.1 annot-version=v4.1 ATGGAAGCTCCTTCTTCTCCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTGCTTCTAACGGAGGAGAGAATTGCTGTGTTAAAGTTGCTCTTC ATATAAGACCGCTCATCGCCGATGAGCGAGCTCAAGGCTGTAAAGATTGCGTCACTGTTGTCTCTGGAAAGCCTCAGGTACAAATAGGCACACATGCATT TACTTTTGATCATGTTTATGGGAGCAGTGGCACTCCTTCGTCTGCTATGTTTGGAGAATGTATTGGCCCATTAGTTGATGGTTTATTCCAAGGATATAAT GCGACTGTTCTTGCTTATGGTCAGACGGGATCTGGGAAGACATATACAATGGGCACAGGCTTCAAAGATGGTTGCCAAATGGGAATAATTCCTCAAGTCA TGAATGTTCTATTCAGCAAGATTGAAACTTTAAAGCATCAAATTGAATTCCAATTGCATGTTTCTTTCATTGAGATTCTGAAAGAAGAAGTGCGAGATTT GCTGGATCCCACCACTTTGAACAAATCAGATACTGCAAATGGGCACGGAGGGAAAGTAAATCTCCCAGGAAAACCACCAATACAAATTCGTGAAACATCA AATGGTGTTATAACACTGGCAGGATCTACAGAAGTGAGTGTTAGTTCATTTAAAGAAATGGCCACTTGCCTAGAACAAGGATCTTTGAGCAGGGCAACAG GAAGCACAAATATGAACAATCAATCGAGTCGTTCACATGCCATCTTTACCATCACCCTAGAGCAAATGCGTAAGCTCAATCCAGTTTTCCCTGGTGATAG CAATCCAAATGACAGTATGAATGAAGAGTATCTATGTGCAAAGTTGCATTTAGTAGATCTTGCTGGATCTGAGCGTGCGAAGAGGACTGGTTCAGATGGC ATGCGTTTTAAGGAAGGAGTTCATATCAATAAGGGCCTTCTTGCACTTGGTAACGTTATCAGTGCACTTGGTGATGATAAAAGGCGAAAAGAAGGTGTTC ATGTGCCCTATCGGGACAGTAAATTGACTCGGCTTCTGCAGGACTCCCTTGGTGGTAACAGCAGAACTGTTATGATAGCCTGCATTAGTCCAGCTGATAT CAATGCTGAGGAAACCCTCAACACCTTAAAGTATGCAAATCGTGCCCGCAACATCCAAAACAAGCCTGTTGTTAACAGAGACCCAATGTCCAGTGAGATG CTAAAGATGCGCCAACAACTTGAGTATTTGCAGGCGGAACTTTTTGCCCGAGGAGGATGCTCTTCCGATGAAGTTCAGGTTCTTAAGGAAAGGATTGCTT GGCTTGAAGCTGCCAATGAGGACCTTTGTCGCGAACTTCATGATTACCGCAGCAGATGCACTGCTGTGGAGCAGCGTGAAACAGACGCTCAAGATGGCAG TATCTGTTCTGTGAAAACTGATGGGCTCAAAAGGAGCTTGCATAGTATAGAGTCTCCAGATTATCAAATGGGTGAAACTATTTCTGGTGACTCCAGGGAT ATTGATGAAGAAGTAGCGAAAGAGTGGGAGCACACACTTTTGCAGAATACAATGGACAAAGAATTGCATGAACTGAACAGACGTTTGGAGGAGAAAGAGT CAGAGATGAAACTTTTTGGAGGGGTTGACACTGCAGCTCTCAAGCAGCACTTTGGCAAGAAAATCATGGAATTAGAGGATGAAAAAAGAGCCGTGCAGCA AGAGAGGGACCGTCTGCTGGCTGAAATTGAAAATCTTTCTGCTGGTTCTGATGGGCAAAAATTGCAAGATATCCATGCCCAGAAATTAAAAACTCTCGAG GCACAGATTCTGGATCTTAAGAAGAAAGAAGAGAACCAAGTTCAGCTTTTGAAGCAAAAACAAAAAAGTGATGAAGCAGCAAAGCGGTTACAAGATGAAA TTCAATCTATGAAGGCACAAAAGGTTCAGTTGCAACATAGGATCAAACAAGAGGCTGAGCAATTTCGACAGTGGAAGGCCTCTCGAGAAAAGGAACTGCT GCAGTTACGGAAGGAAGGTAGAAGAAATGAATATGAAAGGCATAAGCTACAAGCTATAAACCAGCGCCAGAAAATGGTTCTTCAAAGAAAGACAGAAGAG GCTGCAATGGCCACCAAAAGGTTAAAAGAGCTGCTTGAAGCTCGAAAATCTTCTGCACGAGACAGCTCAGCTATCTCCAATGGAAATGGAGCAAATGGTC AGAGCAATGAAAAATCCTTGCAACGTTGGCTTGATCATGAGCTAGAGGTCATGGTAAATGTGCATGAAGTTCGCTTTGAATATGAGAAGCAAAGCCAAGT GCGAGCTGCACTTGCAGAAGAGTTGGTGGTGTTGAAGCAAGTAGATGAGTTTGCTTCAAAAGGATTAAGTCCTCCACGAGGAAAGAATGGATTTGCTAGG GCATCTTCTATGTCACCAAATGCGAGAACGGCCAGAATATCATCCCTTGAAAACATGTTGAGCATAACATCTAATTCACTTGTAGCAATGGCTTCACAAC TTTCAGAAGCAGAAGAGCGAGAGCGTGCATTTACCAACCGTGGACGTTGGAATCAGCTTCGTTCAATGGGAGATGCGAAGAATTTGCTCCAGTATATGTT TAATTCTCTGGGAGATGCAAGGTGTCAACTATGGGAGAAGGAAATGGAAATGAAAGAAATGAAAGAACAATTCAAAGAACTTGTAGGTCTATTGCAACAA AGTGAAGCACAAAGAAAAGAATTTGAGAAGGAGCTAAAATTGAGAGAGCATGCACTTGCAGTTGCTTTGGCTACTGCAGCCTCTGCTGGACAAGAACAGA GGAACTCCCACAATTCACTGAAACACTCGAATGATGACATGAGTGGTCCACTGTCTCCAGTGTCTGTGCCAGCACAGAAACAGCTAAAATATACGCCAGG AATTGCTAATGGTTCAGTCAGAGAGACAGCAGCATTCATTGATCAGACTAGAAAGATGGTTCCACTTGGGCAGTTATCAATGAGAAAATTAGCAGTTGTA GGACAAGGTGGGAAGTTATGGAGGTGGAAGAGAAGTCATCACCAGTGGCTTTTACAATTCAAATGGAAGTGGCAGAAACCATGGAGACTGTCAGAACTGA TCAGGCATAGTGATGAAACAGTTATGAGGGCAAAGCCTCGCCTGCAGGTTCTGCCACGTAAAGTATGA
AA sequence Show only first row Show all	>Potri.002G123500.4 pacid=42776719 polypeptide=Potri.002G123500.4.p locus=Potri.002G123500 ID=Potri.002G123500.4.v4.1 annot-version=v4.1 MEAPSSPSSSPSPSPSPSPASNGGENCCVKVALHIRPLIADERAQGCKDCVTVVSGKPQVQIGTHAFTFDHVYGSSGTPSSAMFGECIGPLVDGLFQGYN ATVLAYGQTGSGKTYTMGTGFKDGCQMGIIPQVMNVLFSKIETLKHQIEFQLHVSFIEILKEEVRDLLDPTTLNKSDTANGHGGKVNLPGKPPIQIRETS NGVITLAGSTEVSVSSFKEMATCLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNPVFPGDSNPNDSMNEEYLCAKLHLVDLAGSERAKRTGSDG MRFKEGVHINKGLLALGNVISALGDDKRRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSSEM LKMRQQLEYLQAELFARGGCSSDEVQVLKERIAWLEAANEDLCRELHDYRSRCTAVEQRETDAQDGSICSVKTDGLKRSLHSIESPDYQMGETISGDSRD IDEEVAKEWEHTLLQNTMDKELHELNRRLEEKESEMKLFGGVDTAALKQHFGKKIMELEDEKRAVQQERDRLLAEIENLSAGSDGQKLQDIHAQKLKTLE AQILDLKKKEENQVQLLKQKQKSDEAAKRLQDEIQSMKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQAINQRQKMVLQRKTEE AAMATKRLKELLEARKSSARDSSAISNGNGANGQSNEKSLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELVVLKQVDEFASKGLSPPRGKNGFAR ASSMSPNARTARISSLENMLSITSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGDAKNLLQYMFNSLGDARCQLWEKEMEMKEMKEQFKELVGLLQQ SEAQRKEFEKELKLREHALAVALATAASAGQEQRNSHNSLKHSNDDMSGPLSPVSVPAQKQLKYTPGIANGSVRETAAFIDQTRKMVPLGQLSMRKLAVV GQGGKLWRWKRSHHQWLLQFKWKWQKPWRLSELIRHSDETVMRAKPRLQVLPRKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	0	1
AT1G22460			O-fucosyltransferase family pr...		Potri.002G100400 [exp]	1.00	0.8296
AT3G60200			unknown protein		Potri.014G043800 [exp]	3.00	0.7751
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.008G158800 [exp]	3.46	0.7473	AGO906,Pt-AGO1.2
AT2G26100			Galactosyltransferase family p...		Potri.006G228900 [exp]	9.16	0.7152
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	9.48	0.7936
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.002G036200 [exp]	14.00	0.7471
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.009G014500 [exp]	16.30	0.7317	Pt-HB1.8
AT5G14230			unknown protein		Potri.001G333600 [exp]	20.97	0.7355
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Potri.009G131900 [exp]	20.97	0.6632
AT2G20650			RING/U-box superfamily protein...		Potri.007G139300 [exp]	23.66	0.7574

Compare expression of checked genes

Potri.002G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.