Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34131 446 / 3e-153 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 436 / 2e-149 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G15480 429 / 8e-147 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 427 / 7e-146 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34138 419 / 6e-143 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36780 414 / 7e-141 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 414 / 9e-141 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36770 405 / 3e-137 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 404 / 8e-137 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36790 399 / 1e-134 UGT73C6 UDP-glucosyl transferase 73C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302400 [exp] 521 / 0 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 507 / 3e-177 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 493 / 7e-172 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 493 / 1e-171 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 492 / 2e-171 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098400 [exp] 490 / 1e-170 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303700 [exp] 489 / 2e-170 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 488 / 5e-170 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303300 [exp] 488 / 6e-170 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010239 [exp] 642 / 0 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2) Lus10019832 [exp] 459 / 4e-158 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014086 [exp] 453 / 5e-156 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 453 / 8e-156 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10019835 [exp] 436 / 3e-149 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10019833 [exp] 429 / 4e-147 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014082 [exp] 428 / 1e-146 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014084 [exp] 427 / 4e-146 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014079 [exp] 422 / 9e-144 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019831 [exp] 410 / 2e-139 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.002G123700.1 pacid=42779198 polypeptide=Potri.002G123700.1.p locus=Potri.002G123700 ID=Potri.002G123700.1.v4.1 annot-version=v4.1 ATGGATTCAGAAGAAAAACAAATTCATGTAATGTTCCTTCCCTACCTGGCACCAGGCCACATGATGCCAATGGTGGACATGGCTAGGCTATTAGCCGGAA ATGGATTAAAGGTCACCATAATCACCACCACCATGAATGCCGCTCAGTTTAAGAATGCTATTGATCGGGATATCAAATCCGGTCGACAGATTTCGTTGGC AACTCTCCGTTTCCCTAGCATAGAAGCTGGTTTACCTGAAGGCTGCGAAAATTTATCCTCCACAACGACCCCTGAAATGACTTTGAAGCTGTTTCACGGC ATAGAATTGCTGCAACCACATATTAAAATGATCTTGCAGAAGCACCGCCCTGACTGCATTGCCTCTGATTATCTCTTCCCATGGACTGTTGATGTTGCCA TTGAACTTGGCATACCGAGGCTTGCCTTTAATGGCAGTGGATTCTTCAATCTTTGTGTTGCAAACAGCATTGATTGTCATCAACCTCACAACAATGTCAC ATCTGAGACAGAACAATTTGTCATCCCAGGCTTGCCAGACAAAGTAACCATTACAAGATCACAACTACCGGATATTGTCAAAGGCGAAAACGAAGTTTTC TCTGCTTTGTTTGATAAACTGAAGGAGGCTGAGAGGAAGAGCTTTGGAGTGTTGATGAATAGCTTTTATGAGTTAGAACCAGCCTATGCTGATCATTTCA GAAAAGTCACTGGAATCAAGGCGTGGCACTTGGGTCCTGTATCTCTGTTCAATAGAAATGCTGATGATAGACTAGAAAGAGGTGGCAAGACTTCAATACG TAAACATAGCTGCCTGGATTGGCTGGAATCCAAGAAACCAAAGTCCGTTCTCTACATTTGTTTCGGAAGCCTGACCAGATTTAGCAAGATTCAAATATCA GAAATTGCTAGTGCACTTGAAGAGTCGAGGCACTCTTTCATTTGGGCTGTAGGAAAAATCCTGAAATCTGACAACGAAGATAACAACCTGGATCGGCAGC AGGACTGGTGGCTGCCAGAAGAGTATGAAGACAGGTTGAAGAACAGTGGCAAAGGATTGATTATAAAGGGATGGGCCCCGCAGCTGCTAATACTGGAGCA CCCAGCAATTGGAGGGTTTTTAACTCACTGCGGCTGGAACTCTATTCTTGAAGGCGTTTGTGCCGGTCAGCCCATGGTCACATGGCCAATTTTTGCAGAG CAGTTTTACAATGAGAAGCTCATAACTCAGGTGCTTAAATTAGGAGTGCCAGTTGGCAATGAGACTTGGAAAGTGTGGGCAAATGAGGACTCACCATTGA TTAACAGAGACAAAATAGAGAAGGCAGTGAGAATTGTTATGGGTGACACAGATGAGGCAATTGAGATGAGGAAACAAGCAAGTAGACTAGCAGCATTCGC GAAGATGACAATTGAAGAGGGCGGATCGTCTTCTAATGACTTGAAAGCCCTAATTGAGGACATCAGAACGTACAAACACGCAACAGGACGCGGGGAATCA AGGTGA
AA sequence Show only first row Show all	>Potri.002G123700.1 pacid=42779198 polypeptide=Potri.002G123700.1.p locus=Potri.002G123700 ID=Potri.002G123700.1.v4.1 annot-version=v4.1 MDSEEKQIHVMFLPYLAPGHMMPMVDMARLLAGNGLKVTIITTTMNAAQFKNAIDRDIKSGRQISLATLRFPSIEAGLPEGCENLSSTTTPEMTLKLFHG IELLQPHIKMILQKHRPDCIASDYLFPWTVDVAIELGIPRLAFNGSGFFNLCVANSIDCHQPHNNVTSETEQFVIPGLPDKVTITRSQLPDIVKGENEVF SALFDKLKEAERKSFGVLMNSFYELEPAYADHFRKVTGIKAWHLGPVSLFNRNADDRLERGGKTSIRKHSCLDWLESKKPKSVLYICFGSLTRFSKIQIS EIASALEESRHSFIWAVGKILKSDNEDNNLDRQQDWWLPEEYEDRLKNSGKGLIIKGWAPQLLILEHPAIGGFLTHCGWNSILEGVCAGQPMVTWPIFAE QFYNEKLITQVLKLGVPVGNETWKVWANEDSPLINRDKIEKAVRIVMGDTDEAIEMRKQASRLAAFAKMTIEEGGSSSNDLKALIEDIRTYKHATGRGES R

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.002G123700 [exp]	0	1
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	1.41	0.8229	Pt-XF1.2
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.010G246200 [exp]	6.32	0.7876
					Potri.014G027950 [exp]	12.84	0.7786
					Potri.018G013850 [exp]	18.89	0.7672
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	18.97	0.7865
AT1G77290			Glutathione S-transferase fami...		Potri.005G182000 [exp]	19.74	0.7865
					Potri.011G062401 [exp]	20.12	0.7969
AT2G31305		INH3	inhibitor-3 (.1)		Potri.007G101900 [exp]	21.42	0.7168
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Potri.016G073000 [exp]	25.21	0.6838
AT5G16200			50S ribosomal protein-related ...		Potri.017G117866 [exp]	25.88	0.7074

Compare expression of checked genes

Potri.002G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.