Plant FIBer expression Database

Potri.002G123800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
AT4G06534 151 / 6e-41 unknown protein
AT4G09250 42 / 0.0007 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
AT4G09310 42 / 0.0008 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
AT4G09200 42 / 0.0008 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G025000
[exp]
783 / 0 AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018730
[exp]
383 / 6e-131 AT4G06536 173 / 2e-53 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Lus10010045
[exp]
378 / 2e-127 AT4G06536 149 / 6e-43 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Lus10010241
[exp]
266 / 1e-85 AT4G06536 140 / 1e-40 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Lus10024806
[exp]
198 / 7e-61 AT4G06534 72 / 2e-14 unknown protein
Lus10020190
[exp]
53 / 2e-07 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Lus10009445
[exp]
50 / 1e-06 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Lus10006084
[exp]
44 / 0.0002 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Lus10009316
[exp]
43 / 0.0005 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0004 Concanavalin PF00622 SPRY SPRY domain
Representative CDS sequence
>Potri.002G123800.1 pacid=42776919 polypeptide=Potri.002G123800.1.p locus=Potri.002G123800 ID=Potri.002G123800.1.v4.1 annot-version=v4.1
ATGCTCGTGTTGTTGAATGTTTTGTTGGCAGGGGGTGCTGTTGTAGTTGCTTCAATGCTTTTTGCGTTGGTAGTCTGGCGATGTTATTGTTTCAAAGACC
GTAGAGGTATTGTTGATACGATAAGAAACAATAGAAGTGCGAGCTTGCAGGATGGGATTGCAAAGCTTCACCAAGGGAGTCTACATCATCAACCTGATCA
ATTAGAAACCAAAAGAAGAGGAAATTATTATGTTTTTCGTCGCGGGGTTCTTACAAGACCTTTGTTCAATTGGGCTGATCATCCGGTGCTTATTACCGAA
GCAGTCGAAAATGGATGGTCTAGATTTGGTTTTACAAGCTACATGTCATCTCCTTCCACGCGATCATCCCTGTTAGGCTTATGTGCGGCTGGTGATTATG
GAAGAGAAACAGATACAGAGATAAGCTGGGAAATTTGTCAAGGATCAGCTGATTTCATGCAAAAGATAAGGCTGAATTCTGGGTTAGAGAAGGTTAATGT
AAGCTATCCTTCTCTGTCTGCTGCTTCGGTAATTAGAACTACTTTGCCTTTACCAGGGCCTCCATTAGGGAACTCATCTTTTCCTCAAGAGGCCTATTTT
GAGATCACGGTTTTGTATTGTCATAGCAATGATCAGGAATCTGTTGGCAAAGCTAAGGAAGGTGAGAGGGCTAAACTCATTCAAGAAAAATCTAATGGAA
AAGCAAATTCGGAATCTTTAGTACATGTAAATAGCAGCCACAGAATCAGCAAAATTGAAGAATTGAAGCTTGCTGGTAAAGATGATTGTCAAGGTTCAGC
AGTATTGCTATCTGTTGGGCTCACTATTGGAGGCTCTCTTCCTTTGAAACTTCCTGGAAGCTATCCAGGATCAATTGGATTTAACTCTAATGGTTCTCTC
TATCTTGATGGCATGGAACTTGTGTTTGAATCCGAGAAAGCAGATTGGGCAAGAACAGATAAAGTAATTGGCTGTGGATTTGATCCTAGGCAAAAACAAG
TGTTTTTCACAGTAGATGGAGAGCTGCTACATGTAGTTCATTGCAAATCAGAGGAATTCGGGACACCCCTTTACCCAGCAATTGCAGCAAACAATGACAT
ATTGGTTCTTGTCAATTTTGGACAAAGTGCCTTTAGTTATGCACAAGCAAATGCTCAAAGAACACCAAATCCTTGCTTCATTGGCCCTCCTGCAAAATCC
CCTTCTCTGGGCTATGAGGATAGTAAAGAGCTCTTCTCAATGGGAAGACTTGACTCTCAGTGGCTCAATAGAAGCACCACCACTAAGGGCAGTCACGTCA
ATGAAGCTAATAATCAAGGAGTTGACTTCGATGACGAATCTGAGGCTGATTTATTTGAAATTGTCTTGGATAATGGTACTGGAAGATCTCCGAACACCAG
GATTTAG
AA sequence
>Potri.002G123800.1 pacid=42776919 polypeptide=Potri.002G123800.1.p locus=Potri.002G123800 ID=Potri.002G123800.1.v4.1 annot-version=v4.1
MLVLLNVLLAGGAVVVASMLFALVVWRCYCFKDRRGIVDTIRNNRSASLQDGIAKLHQGSLHHQPDQLETKRRGNYYVFRRGVLTRPLFNWADHPVLITE
AVENGWSRFGFTSYMSSPSTRSSLLGLCAAGDYGRETDTEISWEICQGSADFMQKIRLNSGLEKVNVSYPSLSAASVIRTTLPLPGPPLGNSSFPQEAYF
EITVLYCHSNDQESVGKAKEGERAKLIQEKSNGKANSESLVHVNSSHRISKIEELKLAGKDDCQGSAVLLSVGLTIGGSLPLKLPGSYPGSIGFNSNGSL
YLDGMELVFESEKADWARTDKVIGCGFDPRQKQVFFTVDGELLHVVHCKSEEFGTPLYPAIAANNDILVLVNFGQSAFSYAQANAQRTPNPCFIGPPAKS
PSLGYEDSKELFSMGRLDSQWLNRSTTTKGSHVNEANNQGVDFDDESEADLFEIVLDNGTGRSPNTRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G06536 SPla/RYanodine receptor (SPRY)... Potri.002G123800
[exp]
0 1
AT3G09390 ATMT-K, ATMT-1,... ARABIDOPSIS THALIANA METALLOTH... Potri.001G239650
[exp]
3.00 0.7975
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Potri.003G197200
[exp]
3.74 0.8011
AT5G10970 C2H2ZnF C2H2 and C2HC zinc fingers sup... Potri.001G047500
[exp]
4.47 0.7847
AT4G34860 A/N-InvB alkaline/neutral invertase B, ... Potri.004G167500
[exp]
7.00 0.7713
AT1G04520 PDLP2 plasmodesmata-located protein ... Potri.002G257300
[exp]
11.40 0.7830
AT2G28840 XBAT31 XB3 ortholog 1 in Arabidopsis ... Potri.009G030000
[exp]
13.63 0.7103
AT2G02250 ATPP2-B2 phloem protein 2-B2 (.1) Potri.018G016100
[exp]
14.45 0.7638
AT4G23980 ARF ARF9 auxin response factor 9 (.1.2) Potri.014G100100
[exp]
15.65 0.7343
AT5G28640 ATGIF1, GIF1, A... ARABIDOPSIS GRF1-INTERACTING F... Potri.013G043700
[exp]
18.97 0.7106 Pt-GIF1.2
AT3G51970 ATASAT1, ASAT1,... ARABIDOPSIS THALIANA STEROL O-... Potri.001G260700
[exp]
19.74 0.7650

Potri.002G123800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.