Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49760 822 / 0 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT4G34110 711 / 0 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G23350 621 / 0 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G22760 514 / 3e-175 PAB3 poly(A) binding protein 3 (.1) AT1G71770 511 / 9e-174 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G34140 351 / 4e-115 PAB1 poly(A) binding protein 1 (.1) AT2G36660 343 / 1e-109 PAB7 poly(A) binding protein 7 (.1) AT3G16380 322 / 3e-102 PAB6 poly(A) binding protein 6 (.1) AT2G18510 121 / 7e-30 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G47500 108 / 4e-25 ATRBP47C' RNA-binding protein 47C' (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025400 [exp] 1036 / 0 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 887 / 0 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G304000 [exp] 887 / 0 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.005G198500 [exp] 676 / 0 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G062700 [exp] 575 / 0 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.001G191500 [exp] 334 / 9e-107 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.007G028300 [exp] 125 / 3e-31 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G128100 [exp] 122 / 2e-29 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.014G034600 [exp] 119 / 1e-28 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010042 [exp] 776 / 0 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 762 / 0 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 753 / 0 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 736 / 0 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014392 [exp] 406 / 2e-133 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 390 / 5e-127 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 389 / 8e-127 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 394 / 4e-123 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021396 [exp] 280 / 5e-86 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10019838 [exp] 137 / 4e-35 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF00658 [poplar] [flax] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Potri.002G124200.1 pacid=42779224 polypeptide=Potri.002G124200.1.p locus=Potri.002G124200 ID=Potri.002G124200.1.v4.1 annot-version=v4.1 ATGGCGCAGATTCAGGTGCATCAAGCAGCGGCTCCAGTACCTGGACCCAACGGAGTGGCTGCGGGACCTGGAGCGATCCAGTTTGTGCCGACTTCGCTTT ATGTTGGAGATCTTGACTTCAACGTGACTGATTCGCAGCTTTACGATCTGTTTAATCAGGTCGGTCAGGTGGTTTCGGTTAGGGTCTGTAGGGATTTGAG CACCAGGCGATCACTTGGTTATGGTTATGTTAACTACAGCAACCCTCAGGATGCTGCAAGGGCATTGGATGTCTTAAACTTCACTCCACTCAATAACAAG CCTCTCAGGATCATGTATTCACATCGGGACCCAAGTATTCGTAAGAGTGGCATGGCGAATATATTTATCAAGAATCTGGACAAGACTATTGATCACAAAG CTTTACATGACACGTTTTCTTCATTCGGTAATATTCTTTCTTGCAAAGTCGCTACTGATGCTTCTGGCCAGTCCAAGGGCTATGGTTTTGTACAATTTGA CAGTGAAGAGGCTGCTCAAAATGCAATAGATAAATTAAATGGCATGCTGATTAATGATAAACAAGTGTATGTTGGAAACTTTCTGCGCAAACAGGAAAGA GATAGTGCTCTAAGTAACATCAAATTCAACAACATCTATGTGAAAAATCTTGCTGAATCCACAACAGACGAAGACTTGAAGAGTATTTTTGAAGAACATG GAGCAATTACTAGTGCTGTAGTGATGAGGGATGCAGATGGAAAATCAAAATGTTTTGGATTTGTCAATTTTGAAAATGTAGATGATGCTGCCAAAGCTGT AGAGGCTCTTAACGGCAAGAAATTTGATGATAAGGAGTGGTATGTTGGAAAAGCCCAAAAAAAATCTGAAAGAGAGCTTGAACTGAAAGGGCGATTTGAG CAGAGCCTGGAGTCTGTTGAAAAATACCAAGCCGTGAATTTGTATATCAAGAATCTGGACGATAGTGTTAATGATGAAAAACTCAAGGAATTGTTCTCTG ACTTTGGCACTATTACTTCGTGCAAGGTTATGCACGACCCTAGTGGTATTAGCAGAGGTTCTGGATTTGTTGCGTTCTCAACTCCTGAAGAAGCATCTAG AGCTCTTGCAGAGATGAATGGAAAAATGGTTGTTAGCAAACCCCTGTATGTTGCCCCTGCTCAACGGAAGGAAGAGAGAAGAGCAAGGCTACAGGCACAA TTTTCTCAAATGAGGCCAGTTGCCATGGCACCTTCAGTTGCTCCTCGTATGCAAATGTATCCTCCTGGGGCTCCCGGTCTTGGGCAGCAATTTCTATATG GGCAAGGACCTCCAGCAATGATTCCTCAGGCTGGATTTGGCTATCAACAGCAACTTGTACCTGGAATGAGGCCTGGTGGTGCTCCAATGCCAAATTTTTT CGTGCCTCTTGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGAGGGCGACGTGGAGGTGGCCCTGTTCAACAGACCCAGCAGCCAGTCCCTCTCATGCAG CAACAGATGCTTCCCAGGGGACGTGTCTATCGTTACCCACCTGGTCGTAACATGCCAGATGTTCCGATGCCAGGTGTTGCTGGTGGCATGCTTTCAGTTC CTTATGACATGGGTGTCATGCCAATACGAGATGCTGCTGGCGGACAGCCCATGCCCATTACTGCTTTGGCTACTGCCCTTGCAAATGCAACACCTGAACA GCAAAGGACGATGCTGGGTGAGGGTCTATACCCCCTAGTGGATCAGCTGGAGCATGATTCAGCAGCCAAGGTTACAGGCATGCTTCTAGAGATGGATCAA ACTGAGGTTTTGCACCTGCTCGAGTCACCAGAAGCTTTGAAGGCAAAAGTGGCAGAGGCTATGGAGGTTCTTAGGACTGTAGCTGCTCAGCAGCAGATCA ACAATCCAGCGGACCAGCTTGCCTCACTGTCTCTGAATGAAAATCTTGTTTCTTTGGTGTGTTTGGTGGATTAG
AA sequence Show only first row Show all	>Potri.002G124200.1 pacid=42779224 polypeptide=Potri.002G124200.1.p locus=Potri.002G124200 ID=Potri.002G124200.1.v4.1 annot-version=v4.1 MAQIQVHQAAAPVPGPNGVAAGPGAIQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNK PLRIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQER DSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFE QSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVAPAQRKEERRARLQAQ FSQMRPVAMAPSVAPRMQMYPPGAPGLGQQFLYGQGPPAMIPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGGGPVQQTQQPVPLMQ QQMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMGVMPIRDAAGGQPMPITALATALANATPEQQRTMLGEGLYPLVDQLEHDSAAKVTGMLLEMDQ TEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNPADQLASLSLNENLVSLVCLVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49760		PABP8, PAB8	poly(A) binding protein 8 (.1)...		Potri.002G124200 [exp]	0	1
AT5G65380			MATE efflux family protein (.1...		Potri.005G160700 [exp]	3.00	0.8632
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.005G230700 [exp]	3.74	0.8351	DHFR-TS-3b
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.014G151700 [exp]	4.47	0.8555
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.014G195300 [exp]	6.24	0.8554
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122801 [exp]	7.48	0.7982
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.013G152100 [exp]	9.48	0.8225
AT4G05160			AMP-dependent synthetase and l...		Potri.017G112800 [exp]	10.39	0.8384
AT3G21865		PEX22	peroxin 22 (.1)		Potri.017G038800 [exp]	12.40	0.8076
					Potri.001G194901 [exp]	16.24	0.8199
AT4G27740			Yippee family putative zinc-bi...		Potri.015G009100 [exp]	17.23	0.8199

Compare expression of checked genes

Potri.002G124200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.