Plant FIBer expression Database

Potri.002G124250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G025700
[exp]
0 / 1 AT1G69490 88 / 3e-20 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010037
[exp]
37 / 0.0009 AT1G65910 102 / 4e-24 NAC domain containing protein 28 (.1)
PFAM info
Representative CDS sequence
>Potri.002G124250.1 pacid=42778078 polypeptide=Potri.002G124250.1.p locus=Potri.002G124250 ID=Potri.002G124250.1.v4.1 annot-version=v4.1
ATGTTGTGCTGGGTCCAGGTGGGAAGGTTGTTTTGGGGACAAGTAATAGGTTTGTTTTGTATTTGGGGAGTTCTGTTAAGAGTGCAGTCAGGACTGATTG
GCTTTTACACGAGTATGCTCCTATTCATCATTTTGAGGCTTCGTTTGTCCTGTGTGAGGTATATGTCAAGTCTCACTGAGGAAATAGCATTCCTGAGAAT
GTTAAGTTCCTGTGCTGAAGAAAGTATTTCTGCTGTCCACAACAATGGCACTCAGCATGATGGATTCCTCACGCCCGACATTGCCAAGGCTGAAGTGCAA
TGA
AA sequence
>Potri.002G124250.1 pacid=42778078 polypeptide=Potri.002G124250.1.p locus=Potri.002G124250 ID=Potri.002G124250.1.v4.1 annot-version=v4.1
MLCWVQVGRLFWGQVIGLFCIWGVLLRVQSGLIGFYTSMLLFIILRLRLSCVRYMSSLTEEIAFLRMLSSCAEESISAVHNNGTQHDGFLTPDIAKAEVQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G124250
[exp]
0 1
AT3G55200 AtSAP130a Arabidopsis thaliana spliceoso... Potri.010G212100
[exp]
3.87 0.8473
AT4G39420 unknown protein Potri.007G078650
[exp]
8.12 0.8459
AT2G37330 ALS3 aluminum sensitive 3 (.1) Potri.006G215700
[exp]
8.12 0.8018
AT4G23000 Calcineurin-like metallo-phosp... Potri.014G034400
[exp]
9.79 0.8088
AT3G18640 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.007G107800
[exp]
10.39 0.8404
AT2G40720 Tetratricopeptide repeat (TPR)... Potri.013G090600
[exp]
12.00 0.8220
AT3G62010 unknown protein Potri.002G184400
[exp]
12.64 0.8398
AT3G47500 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) Potri.013G066700
[exp]
14.28 0.8079
AT5G08490 SLG1 SLOW GROWTH 1, Tetratricopepti... Potri.004G134300
[exp]
16.09 0.8307
AT2G27210 BSL3 BRI1 suppressor 1 (BSU1)-like ... Potri.009G016900
[exp]
20.97 0.7856

Potri.002G124250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.