Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42940 378 / 3e-121 RING/U-box superfamily protein (.1) AT1G45180 363 / 2e-116 RING/U-box superfamily protein (.1) AT2G15530 262 / 3e-77 RING/U-box superfamily protein (.1.2.3.4) AT4G34040 253 / 3e-74 RING/U-box superfamily protein (.1) AT4G31450 147 / 8e-38 RING/U-box superfamily protein (.1) AT5G24870 147 / 1e-37 RING/U-box superfamily protein (.1.2) AT5G10650 142 / 7e-36 RING/U-box superfamily protein (.1.2) AT1G53190 132 / 1e-32 RING/U-box superfamily protein (.1.2) AT1G73760 121 / 9e-30 RING/U-box superfamily protein (.1) AT3G15070 119 / 4e-28 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304900 [exp] 438 / 7e-144 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.009G100100 [exp] 419 / 8e-137 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.005G139900 [exp] 234 / 2e-67 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 179 / 7e-48 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.018G005600 [exp] 146 / 7e-37 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.006G274700 [exp] 144 / 3e-36 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.010G220700 [exp] 135 / 2e-33 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3) Potri.011G097100 [exp] 135 / 3e-33 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.001G373700 [exp] 133 / 1e-32 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010372 [exp] 726 / 0 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10024810 [exp] 650 / 0 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1) Lus10010036 [exp] 587 / 0 AT5G42940 244 / 2e-71 RING/U-box superfamily protein (.1) Lus10018725 [exp] 427 / 2e-142 AT5G42940 170 / 1e-45 RING/U-box superfamily protein (.1) Lus10040389 [exp] 141 / 3e-35 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10034644 [exp] 119 / 8e-30 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10021722 [exp] 117 / 1e-28 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10007967 [exp] 114 / 3e-28 AT1G73760 188 / 8e-58 RING/U-box superfamily protein (.1) Lus10013497 [exp] 113 / 5e-28 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10042443 [exp] 107 / 5e-24 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G124300.2 pacid=42778705 polypeptide=Potri.002G124300.2.p locus=Potri.002G124300 ID=Potri.002G124300.2.v4.1 annot-version=v4.1 ATGCAAGGGCAGAGAAGTATCATTGGCTCCTTGCCAGAAACCCTGGACTTTGACCATGGATCCACTTCTGGTAATGCAATCATAGATCAGCAAATTTGCT TGAGTAACATGCGAAATCCAGCGGAAAACCGATTGACGGAGTTTATGCTATCACCTAGTCGAATGAACAATCCATATGCGAATTCTATTGATCAAGAACG GCAAAATTTGAGTGGCTGGAGCTTAGGTGAACCCAGTTCCAGTGGGCAACAAAACCAGGCAAGTCATGATGATCGGAAACTGGAACATGGATGGTCATCT TCTGCGAGTAGCTCTGCTGGAGCTGGTCCAAGGTTAGAAGAAAGGAGATATGAACCAACAAATATTCTTTCACTAAACAGGGTAAATGTGAACCCACAAT TTGAGCGGATTTCCAACCCGGATGCAATTCCACAGAATATCAACTTGAATGCTGGTTTTGTTGGTCATGGGGGTGATAATTGTCAAGTAATGGATGCCTC TGCTATTTACAAGCCTATTGGCGCAGAAAGCGAGCGGAACTCACCTGCTAGTGGTCCAGATAATTTCTTGCGTCCTGGAAATGGGGGGTACTTAGTGGAA CAGAATGATGGAAGACCAGGTTGTTCATTGGATGGTCGCCGACAATCCTGCAAAAGAAAGGCTGTTGAGGGGAATATTGGCCAGTCATCTGTGGCTGGAA GTTCTAGCTTCTATCAGCGGTCAGAGAGTAATCCATGGCCTGGGGTTCCCAATCGATATGATGCAGGCAGCAGTTTAAGTATATCTGCTCCATCGGAACA AGTGAACCCCAGACTTGGACTTGGAGTAAGAGGACTAGCTTGTGATGCTATCCCAGAATCAGCAGTTGCTGAACGTGCAGAAAGCTCCCATAGAAATTTC CGTTTGAGGATCAATTCTTCAAATCAAGAATCTTCTCCCCCCTCTTTATTTTCTACAGGAAGCACCGTAAGGCGTTCCAGTTTATCATCCTCCCACCGCT CATCAAGACCTCTTCCGATTGATCATTCGTTGGACTTCAGGTCATCATCAGCCATGGATAGTATAACTCCTCAAAATCAGCCAGTTATCCCAGCTCCAGC TTTGCCACAGAATGTGCAATCATTTAGATGGAATGAAAGCTCAAGCTCGAGAACTGGTACTTCATCAAGTTCCATTAGCTTGGATGATAGAGAGGAACCC AATGCAAGAAACATAACAAGACACATATGGGAACATCCTATATTTGCTCCTGCGACTGAGTTGAGAACTTCAGTTAGGAATCCAGGCAATAGAAGTTTAA CCAGTGGACAGGTAAGTGGCCCTGGAAATGTTGGTTCTACATCTCGGACTGGTGCAAGCCCAGGTATCCACCCTCTATCTGCCCCAACGTGGGGTCCTCA TACAAATCCTCCTTCAAGAAATTCACGAAGACTAGCTGAGTATGCTCGTCGATCATTGTTTTCTTCTTCTGCTGCTGCTGCTGCTGATACTGGAGGCCAG AGCAGTACTCATTCCCCATTCCATTCTGGTGCTTCCAGCTCAGAAGATACAGTGCCTTCATCTGGAGCTGGTAACCAGGGTCTTCATCGACCACATCCAA GATCAGCATCATGGTTGGAGAGACAAGGTGATGGTGTACTGGGAATTCCTTATCCTCTGCGAGCTTTGTCCAGTGAAGGAAGAAGCAGGCTTGTTGTCTC CGAGCAGATTCGCAATGTCTTGGATCTCATGCGTAGGGGTGAAAGCTTGCGATTTGAGGATGTTATGATTCTTGACCAATCAGTTTTGTTTGGAGCAGCT GACATGTATGATAGGCATAGGGATATGCGGCTTGATGTTGATAACATGTCTTATGAGGAGTTGCTGGCTTTGGAAGAGCGCATTGGAAATGTCAGTACTG GATTGAGCGAAGAAACTATAGTAAACAACTTAAAACAGCAGAAATACTCTGTTGCTGTTGGAGCGAAGGTGGAGGCTGAACCATGCTGCATTTGCCAGGA GGAATACAATGATGGAGAAGATCTTGGAACACTGGACTGCGGACATGATTTCCACGCGGGGTGTGTTAAGCAGTGGCTGATGCACAAGAATTGGTGCCCC ATCTGCAAAACAACAGGACTTGCTACATGA
AA sequence Show only first row Show all	>Potri.002G124300.2 pacid=42778705 polypeptide=Potri.002G124300.2.p locus=Potri.002G124300 ID=Potri.002G124300.2.v4.1 annot-version=v4.1 MQGQRSIIGSLPETLDFDHGSTSGNAIIDQQICLSNMRNPAENRLTEFMLSPSRMNNPYANSIDQERQNLSGWSLGEPSSSGQQNQASHDDRKLEHGWSS SASSSAGAGPRLEERRYEPTNILSLNRVNVNPQFERISNPDAIPQNINLNAGFVGHGGDNCQVMDASAIYKPIGAESERNSPASGPDNFLRPGNGGYLVE QNDGRPGCSLDGRRQSCKRKAVEGNIGQSSVAGSSSFYQRSESNPWPGVPNRYDAGSSLSISAPSEQVNPRLGLGVRGLACDAIPESAVAERAESSHRNF RLRINSSNQESSPPSLFSTGSTVRRSSLSSSHRSSRPLPIDHSLDFRSSSAMDSITPQNQPVIPAPALPQNVQSFRWNESSSSRTGTSSSSISLDDREEP NARNITRHIWEHPIFAPATELRTSVRNPGNRSLTSGQVSGPGNVGSTSRTGASPGIHPLSAPTWGPHTNPPSRNSRRLAEYARRSLFSSSAAAAADTGGQ SSTHSPFHSGASSSEDTVPSSGAGNQGLHRPHPRSASWLERQGDGVLGIPYPLRALSSEGRSRLVVSEQIRNVLDLMRRGESLRFEDVMILDQSVLFGAA DMYDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETIVNNLKQQKYSVAVGAKVEAEPCCICQEEYNDGEDLGTLDCGHDFHAGCVKQWLMHKNWCP ICKTTGLAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	0	1
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.011G033000 [exp]	1.41	0.8913
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	2.64	0.8642
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.016G018300 [exp]	3.46	0.8688	Pt-FHY3.1
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.005G125600 [exp]	7.07	0.8659
AT5G66540			unknown protein		Potri.012G082600 [exp]	7.74	0.8649
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.008G149900 [exp]	7.87	0.8769
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	8.36	0.8550
AT3G60850			unknown protein		Potri.014G070200 [exp]	8.48	0.8598
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.001G151700 [exp]	9.79	0.8455
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Potri.007G082100 [exp]	12.36	0.8569

Compare expression of checked genes

Potri.002G124300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.