Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 577 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT2G05920 478 / 2e-158 Subtilase family protein (.1) AT4G34980 476 / 2e-157 SLP2 subtilisin-like serine protease 2 (.1) AT1G01900 466 / 3e-153 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 466 / 3e-153 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67360 464 / 4e-153 ARA12 Subtilase family protein (.1) AT5G51750 450 / 5e-147 ATSBT1.3 subtilase 1.3 (.1) AT3G14240 446 / 1e-145 Subtilase family protein (.1) AT3G14067 443 / 1e-144 Subtilase family protein (.1) AT2G04160 404 / 2e-129 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026700 [exp] 1235 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 1189 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 837 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G100500 [exp] 569 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 552 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 496 / 7e-165 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 485 / 6e-161 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G074600 [exp] 473 / 3e-156 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.006G141200 [exp] 469 / 8e-155 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001130 [exp] 857 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 837 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009365 [exp] 668 / 0 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 661 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042644 [exp] 643 / 0 AT5G67090 413 / 5e-136 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 553 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 543 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10027891 [exp] 523 / 4e-175 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 523 / 4e-175 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10024960 [exp] 477 / 1e-157 AT1G04110 1054 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.002G124500.1 pacid=42779436 polypeptide=Potri.002G124500.1.p locus=Potri.002G124500 ID=Potri.002G124500.1.v4.1 annot-version=v4.1 ATGGCGACTCGTGACAGTGTTTCCTTGTATAAGTTGTGGATTTCAGTTATCACTATCCTCCCTTTCACTCAAACATTATCACAACCCGAAAATTATATTG TTCACATGGATTTATCGGTGATGCCCAAAGCCTTTTCAGGCCAGTATCATTGGTACTTGTCCACTCTTGCTTCTATAATTGATGTCTCTGATAATAGCAC CACTAGGGCTACTTCTGCCACTCTGACTGCCTCTTCTAAACTGCTTTACAGTTATACTCATGTTATCAATGGTTTCAGTGCCAGTCTCACTCCTTCAGAG CTTGAGGTTTTAAAAAATTCTCCAGGCTACATTTCTTCCATCAAAGACTTACCTGTTAAGCAGGACACAACTCATTCATCCAAATTTCTTGGCCTTACAC CTCAGTCCCTTGCCTGGAAGGTGTCAAATTATGGTGAAGGTATCATTATTGGGTTGGTGGACTCTGGTGTTTCGCCAGAAAGCCAGAGTTACAACGACCA TGGAATGCCTGAGATTCCAGAAAGATGGAAAGGAGAATGTGAAAGTGGCACTCAATTCAACTCCTCATTGTGCAACAAAAAGCTCATCGGAGCAAGATTT TTCAACAAAGGCCTAATTGCAATGTATCCTAACATCACTATATCTATGAATTCGACGCGTGATACGGATGGGCATGGGACACACACATCTAGCACCGCTG CTGGAAATTATGTGGAAGGTGCGTCATACTTTGGCTATGCCCCTGGAACTGCTAATGGAGTAGCTCCTCGGGCGCATGTAGCCATGTACAAGGTTTTCTT TGACGAAGCTGGTGCTTCTACAACTGATATAATTGCTGCAATCGACCAAGCGATTAGCGATGGTGTAGATGTATTATCTTTATCATTTGGCTTGGATGGG ATTCCTTTGAATGAAGACCCCATTGCCTTGGCAACATTTGCAGCCGTAGAGAAGAATGTATTTGTGTCCACTTCTGCTGGAAACGAAGGGCCTTTCTACG AAACTCTACATAATGGCATACCATGGGTGTTAACAGTAGCTGCTGGTACTCTAGACCGTGAATTTAATGCAGTTTTGACACTTTGCAATGGAATTTCAAT CACAGGTTCATCTCTCTATTTGGGGACTACATATTTTTATGAAGTGCCTATTGTTTTTATGGACGGGTGTCACAAAGTGAGCGAATTGAACAAAATTGGA CCGAAGATTGTGGTTTGTCAGGGTGGGAACGATGGTAATGACTTAAGCGACCAAGTTGAAAATGTCATCAAGGCAAACGTTACAGCTGGTGTTTTCATAA CAAATTTTACAGATACTGAAGAATTCATCCAAAGTCAATTTCCAGTTGTTCTTCTGAATCAGAAAGATGGGAAAACCATAATAGATTACATCAAGAACAG CAACAAGCCACAAGCAAGCGTAGAATTTCGAAAAACAAATCTGGGGATTAAATCAGCTCCAAGTGTTACTGGTTATAGTTCTAGAGGGCCATCGACGAGC TGTCCATTGGTAATGAAGCCTGACATTATGACTCCAGGCTCACTAATATTAGCTTCATGGCCTCAAAATGTTGCCGTGGCTCTGAACAATTCACAACCTT TGTTCAGTAATTTTAATATACTATCAGGGACATCTATGGCTTGCCCGCATGCAGCAGGAGTGGCTGCACTCTTGAGGAAGGCACATCCTGATTGGAGTCC AGCTGCTATACGGTCAGCCATGATGACAACCGCTGATATAATGGATCATACCATGAAACCTATCAACGACATCGGTTTTGGTAACAAGACACAACTAGCC AGTCCTCTTGCCATGGGAGCTGGACAAGTTAATCCCAACAAAGCTCTAGATCCTGGTCTCATTTATGATGTTAATTCAAATGATTATGTGAGGCTACTCT GTGCTTTAAAATTCACAGAAAAACAAATCCAAGCTATCACAAGGTCATCTTCCACAAATTGTTCCAACCCATCCACCGACCTTAACTACCCTTCTTTTAT CGCCTATTTCAATGCAAAAGATTCGCCATCAAATTTGACCACCGTGCGAGAATTTCAAAGGACAGTGACCAATGTTGGAGCGGAAATGTCTACTTACACC GTAAATGTGACGCCCATGATTGGTTTAAAGGTAAGTGTCATTCCAGACAAGTTGGAGTTCAGGGCCAAGTATGAGAAATTAAGCTACAAACTGATCATTG AAGGTCCAGCACTCTTGGATGAGACTGTAACTTTCGGTTATCTTAGTTGGGTTGATGTGGGGGGTAAACATATTGTCAGGAGTCCCATAGTGTCAACAAG TTTGAGTCCACAATTGTCTTAG
AA sequence Show only first row Show all	>Potri.002G124500.1 pacid=42779436 polypeptide=Potri.002G124500.1.p locus=Potri.002G124500 ID=Potri.002G124500.1.v4.1 annot-version=v4.1 MATRDSVSLYKLWISVITILPFTQTLSQPENYIVHMDLSVMPKAFSGQYHWYLSTLASIIDVSDNSTTRATSATLTASSKLLYSYTHVINGFSASLTPSE LEVLKNSPGYISSIKDLPVKQDTTHSSKFLGLTPQSLAWKVSNYGEGIIIGLVDSGVSPESQSYNDHGMPEIPERWKGECESGTQFNSSLCNKKLIGARF FNKGLIAMYPNITISMNSTRDTDGHGTHTSSTAAGNYVEGASYFGYAPGTANGVAPRAHVAMYKVFFDEAGASTTDIIAAIDQAISDGVDVLSLSFGLDG IPLNEDPIALATFAAVEKNVFVSTSAGNEGPFYETLHNGIPWVLTVAAGTLDREFNAVLTLCNGISITGSSLYLGTTYFYEVPIVFMDGCHKVSELNKIG PKIVVCQGGNDGNDLSDQVENVIKANVTAGVFITNFTDTEEFIQSQFPVVLLNQKDGKTIIDYIKNSNKPQASVEFRKTNLGIKSAPSVTGYSSRGPSTS CPLVMKPDIMTPGSLILASWPQNVAVALNNSQPLFSNFNILSGTSMACPHAAGVAALLRKAHPDWSPAAIRSAMMTTADIMDHTMKPINDIGFGNKTQLA SPLAMGAGQVNPNKALDPGLIYDVNSNDYVRLLCALKFTEKQIQAITRSSSTNCSNPSTDLNYPSFIAYFNAKDSPSNLTTVREFQRTVTNVGAEMSTYT VNVTPMIGLKVSVIPDKLEFRAKYEKLSYKLIIEGPALLDETVTFGYLSWVDVGGKHIVRSPIVSTSLSPQLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67090			Subtilisin-like serine endopep...		Potri.002G124500 [exp]	0	1
AT1G30700			FAD-binding Berberine family p...		Potri.011G158300 [exp]	1.00	0.9118
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	1.41	0.9094
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.002G070700 [exp]	1.73	0.9065
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.019G057500 [exp]	3.00	0.8845	Pt-EXPA8.1
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073000 [exp]	4.58	0.8909
					Potri.002G055566 [exp]	6.16	0.8541
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	6.32	0.8927
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052300 [exp]	13.96	0.8623
AT3G16460		JAL34	jacalin-related lectin 34, Man...		Potri.017G010900 [exp]	20.63	0.7757
AT5G20270		HHP1	heptahelical transmembrane pro...		Potri.006G064400 [exp]	23.02	0.8827

Compare expression of checked genes

Potri.002G124500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.