Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G46264 352 / 9e-121 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G11660 190 / 4e-57 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT4G36990 179 / 7e-54 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT5G62020 179 / 1e-53 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT1G32330 162 / 1e-45 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 162 / 2e-45 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G22830 150 / 8e-42 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G02990 150 / 3e-41 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G41690 143 / 1e-40 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT5G16820 145 / 3e-39 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027100 [exp] 634 / 0 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G273700 [exp] 286 / 8e-96 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 280 / 3e-93 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G108100 [exp] 194 / 4e-59 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.007G043800 [exp] 192 / 9e-59 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.012G138900 [exp] 174 / 7e-52 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.015G141100 [exp] 171 / 8e-51 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.016G056500 [exp] 163 / 2e-48 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.003G095000 [exp] 167 / 3e-47 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042646 [exp] 340 / 1e-114 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10001133 [exp] 338 / 4e-114 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10036062 [exp] 207 / 2e-64 AT1G46264 245 / 3e-79 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10008007 [exp] 196 / 2e-59 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 196 / 7e-59 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10014994 [exp] 191 / 2e-58 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10019348 [exp] 182 / 3e-55 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10026819 [exp] 168 / 3e-51 AT1G46264 167 / 2e-51 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10009351 [exp] 171 / 1e-50 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10030956 [exp] 171 / 1e-48 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.002G124800.1 pacid=42777547 polypeptide=Potri.002G124800.1.p locus=Potri.002G124800 ID=Potri.002G124800.1.v4.1 annot-version=v4.1 ATGGCTCTCATGTTAGATAACTGTGAAGGCATATTACTCTCATTAGACTCCCACAAATCAGTCCCAGCTCCTTTCCTTACCAAAACCTACCAACTGGTAG ATGATCCAGCCACTGACCACATAGTTTCTTGGGGTGAAGATGACACTACTTTCGTTGTTTGGAGGCCACCTGAGTTTGCTCGTGATCTCCTTCCTAACTA TTTCAAGCATAACAACTTCTCTAGCTTTGTCAGGCAACTCAATACCTATGGGTTTAGGAAGATTGTACCTGACAGATGGGAGTTCGCTAATGAGTTTTTC AAGAAGGGAGAAAAACATTTACTTTGTGAAATCCATAGAAGAAAAACAGCTCAGCCACAAGTAGCCATTAATCAGCACCACCCACATTCTCCTTTTGGTG TTAACGGGCCCAGTTTCTTTCCTTTCCCAAGCAGAACCAGCATCTCTCCATCTGATTCAGATGAGCAAGCCAACAACTGGTGTGATTCACCTCCTCTCAC TTCACCACCAAGAGGAGGAGTTGCTACCGCCACAGTTATTGGTGGTGGGGGTGGATTTAATAGTTCAGTCTCTGCGTTATCAGAAGATAATGAAAGACTA AGGAGAAGCAACAATATGCTAATGTCCGAGCTTGCGCACATGAAAAAGCTTTACAATGATATTATTTACTTTGTCCAAAATCATGTCAAGCCTGTTGCTC CCAGCAATTCCTACTCTTCTTCTTTGCTTCTTTGTGGCCCATCACCTTATGCTACAACAAATCATGTTACTTCTAATGGTTCTCTAGTACAGAAGCCCTT AAACCAGCTTCTTGGGTACTATCCTACAACTGCTCCAACTAACCCTAAGCAAATCCCTCAAGTTCATGTTTTGATCAACTCACCTACAACTACTTCACAG AGCTCTTTGACCATTCTTGAAGAAGCCAACAACAATGGTTGCAAGACAAAGTTGTTTGGTGTGTCATTACAAACAAAGAAAAGATTGCACCCAGAGTATG GTTCAAATCCAGGAAATATGGAAACTAGCAAGGCTCGTTTGGTGTTGGACAAGGATGATTTAGGATTGAATCTTATGCCTCTTTCAAGATGTTAG
AA sequence Show only first row Show all	>Potri.002G124800.1 pacid=42777547 polypeptide=Potri.002G124800.1.p locus=Potri.002G124800 ID=Potri.002G124800.1.v4.1 annot-version=v4.1 MALMLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFF KKGEKHLLCEIHRRKTAQPQVAINQHHPHSPFGVNGPSFFPFPSRTSISPSDSDEQANNWCDSPPLTSPPRGGVATATVIGGGGGFNSSVSALSEDNERL RRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCGPSPYATTNHVTSNGSLVQKPLNQLLGYYPTTAPTNPKQIPQVHVLINSPTTTSQ SSLTILEEANNNGCKTKLFGVSLQTKKRLHPEYGSNPGNMETSKARLVLDKDDLGLNLMPLSRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.002G124800 [exp]	0	1
AT2G01818			PLATZ transcription factor fam...		Potri.008G137300 [exp]	1.41	0.8980
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.015G038700 [exp]	2.23	0.8761	PIN1,PIN1.3
AT5G15080			Protein kinase superfamily pro...		Potri.006G066100 [exp]	3.31	0.8603
AT3G53190			Pectin lyase-like superfamily ...		Potri.006G122000 [exp]	5.47	0.8870
AT2G25270			unknown protein		Potri.006G258700 [exp]	9.38	0.8765
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	10.53	0.8848
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	10.58	0.8651
AT1G45207			Remorin family protein (.2)		Potri.014G027900 [exp]	11.48	0.8580
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	11.83	0.8571	XYL1.1
AT2G40815			Calcium-dependent lipid-bindin...		Potri.019G065500 [exp]	12.48	0.8474

Compare expression of checked genes

Potri.002G124800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.