Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45207 384 / 9e-127 Remorin family protein (.2) AT4G36970 145 / 1e-37 Remorin family protein (.1) AT1G67590 56 / 5e-08 Remorin family protein (.1.2) AT2G02170 53 / 4e-07 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027900 [exp] 848 / 0 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.005G138500 [exp] 262 / 1e-81 AT4G36970 231 / 1e-71 Remorin family protein (.1) Potri.007G044350 [exp] 73 / 7e-15 AT4G36970 100 / 4e-25 Remorin family protein (.1) Potri.010G056800 [exp] 57 / 2e-08 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.008G178300 [exp] 55 / 8e-08 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.008G144300 [exp] 51 / 2e-06 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.001G163000 [exp] 50 / 3e-06 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.001G358600 [exp] 44 / 0.0004 AT1G30320 448 / 2e-153 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005708 [exp] 602 / 0 AT1G45207 454 / 2e-154 Remorin family protein (.2) Lus10042649 [exp] 566 / 0 AT1G45207 424 / 2e-141 Remorin family protein (.2) Lus10009750 [exp] 523 / 2e-180 AT1G45207 445 / 8e-151 Remorin family protein (.2) Lus10010227 [exp] 504 / 9e-173 AT1G45207 441 / 6e-149 Remorin family protein (.2) Lus10039007 [exp] 191 / 6e-55 AT4G36970 213 / 4e-65 Remorin family protein (.1) Lus10027302 [exp] 190 / 2e-54 AT4G36970 215 / 8e-66 Remorin family protein (.1) Lus10003936 [exp] 43 / 0.0009 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.002G125200.14 pacid=42779606 polypeptide=Potri.002G125200.14.p locus=Potri.002G125200 ID=Potri.002G125200.14.v4.1 annot-version=v4.1 ATGTGGAGAGGCAGAGAGTTGCCACAGGCAATACATAGCGAAACTTCCAGAATGCCGGAGCTGGTGCGCCACCGCGACCAGATTTCGTCGAGATCAGGAT TCAGAGCTCGGGATGCAAGTCCTGACTCTGTAATTTTCACTTTAGAATCCAACTTCAGTCTCTTCTCTTCTACTTCTGCTAGCGTCGATCGCTGCTCTTT TGCTTCCGATGCTTATGATCATGAATATCTCGCCTCTGAAATCTCTCTGTGTGCAATGCAGCATTTGGCTGCACATGATCAACAAGAGAGCTATTGGAGT GGTCCAGATCCAAACAAACTGAATACAGTAGGGAATAACAACAAGCAGCACACTCACACTCACACTCGTCCCTCCAGAAAAGCAGAAAAAGCGAAAGTTC AAAAAGAAGAAGACGATAATAATCTCCTAGATTCAGCAAGAAGCTCCTTCTCTCTCGCTCTCAAAGAGTGTCAGGAGAGCAGATCCAGATCTGATGCAAT TACAAAGAAACCGGATAGGCGGAGACCTGCATCACTAGATCTTAATAATGTCGTTACATCTCCTTCGCCGCGATTGGGTAACATGAAAAAGAGTATAGTT TATTCATCTCGAAAATCCGGAACATTTCCTAGTCCTGGAACTCCAAATTATCATTCTAGTGCTGGGATGCAGAAAGGTTGGAGTTCAGAGCGAGTACCAT TGCCAAATAATAGTAATAGGCGCCAAGTCATGAATGCTACTGCGGCTGCTGTTTCCCCTTTTAATAATAATACTAATAACAATAACAACGGGAGACCATT GCCGTCCAAATGGGAGGATGCTGAGAGGTGGATATTTAGTCCTGTTTCGGGAGATGGGTTTGTTAGGAGTTCGATTCAGCCTGCTCAGAGGAGGCCTAAG TCAAAGAGCGGACCACTTGGACCACCGGGGGTTGCGTATTATTCCTTGTATTCGCCTGCGATTCAGGTGTTTGATGGCAGGAATATGGGGAATTTCATTG CTGGTTCTCCGTTTTCCGCCAGTGTTATAGCTGCCGATGGGTTGGCTGTTAAATCAAACGGGAGCCATGGTGTTGCATTTCCTATGCGGACAGAGCCTTG CATGGCTCGTTCGGTTAGCGTGCATGGTTGCTCTGAGATGCTAGCTCAGTCTTCTTTGCCATCCCAAGATGAAAAGCTTGATGGTGTCAAGGATGCAGCA ACTGATATATCTCGCGCTGTTTCAAGAAGGGACATGGCCACCCAAATGAGCCCTGAAGGTAGCAATCATTCATCTCCCACCAGGCAGCCATCATTCTCCG TCTCCACTCCCTCTTCCCTAGCTATTGTGGAACTGCAGGGTTTCAATTCCTCTAAATCTGAGGTCAGGGATGTACAGGTGGATGAAAGGGTTACGGTCAC AAGGTGGTCTAAGAAACACAGAGCCCGCAACCATGGAAAAAGTTCAGAAATTGTTGATGACTGGAGAGAGGAAGCTGCTGATGCTCTGTCATCAGGTTTG GATGTTTCGGAGGCTGGAGAGAGCATTTCAAAGGTCAAAAGAGAGGAAGCCAAAATCACAGCATGGGAGAACCTGCAGAAGGCAAAAGCTGAGGCAGAAC TAAGGAAACTTGAGATGAAACTTGAGAAAAAGAGATCATCGTCTATGGATAGAATTATGAATAAACTGAGATCAGCTCAAAAGAGAGCCCAAGAAATGAG GAGCTCGGTACTAGCAAACCAGGCACATCAAGTTTCCACAAACTCTCGTAAAGCTATATCATTCCGTAGAACCTGTCAAAAGGGTTCCCTGAGTGGTTGT TTCACGTGCCATGCTTTCTAA
AA sequence Show only first row Show all	>Potri.002G125200.14 pacid=42779606 polypeptide=Potri.002G125200.14.p locus=Potri.002G125200 ID=Potri.002G125200.14.v4.1 annot-version=v4.1 MWRGRELPQAIHSETSRMPELVRHRDQISSRSGFRARDASPDSVIFTLESNFSLFSSTSASVDRCSFASDAYDHEYLASEISLCAMQHLAAHDQQESYWS GPDPNKLNTVGNNNKQHTHTHTRPSRKAEKAKVQKEEDDNNLLDSARSSFSLALKECQESRSRSDAITKKPDRRRPASLDLNNVVTSPSPRLGNMKKSIV YSSRKSGTFPSPGTPNYHSSAGMQKGWSSERVPLPNNSNRRQVMNATAAAVSPFNNNTNNNNNGRPLPSKWEDAERWIFSPVSGDGFVRSSIQPAQRRPK SKSGPLGPPGVAYYSLYSPAIQVFDGRNMGNFIAGSPFSASVIAADGLAVKSNGSHGVAFPMRTEPCMARSVSVHGCSEMLAQSSLPSQDEKLDGVKDAA TDISRAVSRRDMATQMSPEGSNHSSPTRQPSFSVSTPSSLAIVELQGFNSSKSEVRDVQVDERVTVTRWSKKHRARNHGKSSEIVDDWREEAADALSSGL DVSEAGESISKVKREEAKITAWENLQKAKAEAELRKLEMKLEKKRSSSMDRIMNKLRSAQKRAQEMRSSVLANQAHQVSTNSRKAISFRRTCQKGSLSGC FTCHAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	0	1
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	1.00	0.9186
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	2.00	0.9065
AT1G10180			unknown protein		Potri.015G119300 [exp]	3.00	0.9054
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	3.16	0.9025
AT2G25220			Protein kinase superfamily pro...		Potri.001G048500 [exp]	3.16	0.8911
AT1G73240			unknown protein		Potri.003G213050 [exp]	8.48	0.8941
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	8.48	0.8962
AT3G15690			Single hybrid motif superfamil...		Potri.001G172600 [exp]	9.32	0.8306
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	10.00	0.9027
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	14.07	0.8803

Compare expression of checked genes

Potri.002G125200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.