Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42920 319 / 2e-102 AtTHO5 THO complex, subunit 5 (.1.2) AT1G45233 241 / 8e-75 AtTHO5 THO complex, subunit 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028100 [exp] 468 / 4e-159 AT5G42920 827 / 0.0 THO complex, subunit 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009754 [exp] 352 / 5e-114 AT5G42920 889 / 0.0 THO complex, subunit 5 (.1.2) Lus10006490 [exp] 349 / 6e-113 AT5G42920 868 / 0.0 THO complex, subunit 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09766 [poplar] [flax] FmiP_Thoc5 Fms-interacting protein/Thoc5
Representative CDS sequence Show only first row Show all	>Potri.002G125300.2 pacid=42777043 polypeptide=Potri.002G125302.1.p locus=Potri.002G125300 ID=Potri.002G125300.2.v4.1 annot-version=v4.1 ATGCTTCATTATGAGCTTCACCGGAGAAAAGAGCTGTGTACGTTGTGTGACAAACTGGGGCAGCAAAAGGAAGCCCTGTTTGGAGATTTGCCGTCACATC TTAAATCGCTTAAGAAAGCTTTATTGCCTGTACAGAATCAATTAGGAGTTCTGCATACGAAGAAATTAAAGCAGCACAACTCAGCGGAGCTGCTTACGCC TCCACCTAATGTGATTTACTCGCAGTTGTTGGCGCAAAAGGAAGCTTTTGGAGAATGTATTGATTTGGAGCTGGCGGGAAATGTTAAAGAAGCTCAATCT TCAACTCGCCAGCAAGGAAATAAGGACAGCGGTATATCCACCAATGAAGAGACTTCCAGGTTGGTGGATGATGCACCTGACGAGGAAGATGATGGTCAAA GGAGGGGAAAGAGGGTTCAAAGCAAAGAGGGCATTGATCAAGCAGGATTGTATCAAGCTCATTCACTCAAGACTATTCTCCATATATTTGATGATGAGTT CGAATACTTTCTAAAGTTGAATGTTGTATGTGTTGGGGTTGAAGGATCGCTTGAAGGACCAGAAAATAACATCTTGTGCAACTTGTTTCACAGTGACACT GGCACTGAGCTGCCTCACCAGGTATGGACAACTTCACGTCCATATAAGTGGGCCCAGCCTTTGGCAGGGATTGGTTTCTCACTAGAGACAGCCCCATTAC TCAGTGACCTTGAACCTGCAAGCAGTGAAACAGCTATAAATGAGATTGTTTTATCTGGATTGTCTCTGTATCGCCAGCTGAATCGGTTGCAGACAGTTGT GCAAAGAATTCGCTCTCAGAAAAGGGCACAGCAGGCTCTTGTGGAACAGCTTGAATCACTTACAAAGCTTGAATGGCCTGCTCTGAATTGTGAAAGCCCC CCACCTAATCAGGCTTCAACTTTGCCCGTCATTGATACAAATCAACTTCAGGAACCAATACATGTCAATATGGACGGAAGATCAGAGAATGTTGGGGAAG ATGGGGTCTCTAATCGCAGCTGCGTCAATCTTTATATATTAAAGCTGCTACCTTTGGATCAAGAAAATCATGTCTTAGCTCATCAAGTGCGCACTGTCTT GCAGTGTTGTTTGAGTATTTCATCAATGAGGCATCTCCAAGTGCAAAGTGTTCTTCTGCTGTTGATGTTGGTTTGTGTAAAACCTGTTAGTGGTAGTCTT CTTGCTAGATCATTTAGAGGGAGGGATCGCAGGAAGATGATATCCTGGAAGGACATGGCATGCACCTCTGGCTACCCATACTAG
AA sequence Show only first row Show all	>Potri.002G125300.2 pacid=42777043 polypeptide=Potri.002G125302.1.p locus=Potri.002G125300 ID=Potri.002G125300.2.v4.1 annot-version=v4.1 MLHYELHRRKELCTLCDKLGQQKEALFGDLPSHLKSLKKALLPVQNQLGVLHTKKLKQHNSAELLTPPPNVIYSQLLAQKEAFGECIDLELAGNVKEAQS STRQQGNKDSGISTNEETSRLVDDAPDEEDDGQRRGKRVQSKEGIDQAGLYQAHSLKTILHIFDDEFEYFLKLNVVCVGVEGSLEGPENNILCNLFHSDT GTELPHQVWTTSRPYKWAQPLAGIGFSLETAPLLSDLEPASSETAINEIVLSGLSLYRQLNRLQTVVQRIRSQKRAQQALVEQLESLTKLEWPALNCESP PPNQASTLPVIDTNQLQEPIHVNMDGRSENVGEDGVSNRSCVNLYILKLLPLDQENHVLAHQVRTVLQCCLSISSMRHLQVQSVLLLLMLVCVKPVSGSL LARSFRGRDRRKMISWKDMACTSGYPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Potri.002G125300 [exp]	0	1
AT2G45260			Plant protein of unknown funct...		Potri.014G067600 [exp]	2.00	0.9470
					Potri.002G161801 [exp]	2.44	0.9490
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.011G127250 [exp]	6.32	0.9459
AT3G04830			Protein prenylyltransferase su...		Potri.013G038501 [exp]	6.48	0.9274
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.015G065001 [exp]	7.41	0.9310
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.004G121100 [exp]	10.00	0.9315
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.012G040800 [exp]	10.39	0.8916
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.008G224084 [exp]	10.48	0.8910
AT5G47540			Mo25 family protein (.1)		Potri.019G057100 [exp]	10.95	0.9205
AT1G05910			cell division cycle protein 48...		Potri.017G031150 [exp]	11.83	0.9094

Compare expression of checked genes

Potri.002G125300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.