Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ABF2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45249 305 / 4e-100 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT1G49720 179 / 1e-51 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT4G34000 179 / 3e-51 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G19290 159 / 9e-44 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT3G56850 129 / 4e-34 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 110 / 2e-27 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT5G42910 108 / 9e-26 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G44460 99 / 9e-23 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 70 / 9e-13 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G17770 54 / 3e-08 bZIP FDP, ATBZIP27 FD PARALOG, basic region/leucine zipper motif 27 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028200 [exp] 529 / 0 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G101200 [exp] 335 / 3e-111 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.004G140600 [exp] 209 / 1e-62 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.010G248300 [exp] 123 / 1e-31 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 121 / 6e-31 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.006G083000 [exp] 120 / 5e-30 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.008G010800 [exp] 118 / 7e-30 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 105 / 9e-26 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 104 / 3e-25 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006489 [exp] 278 / 2e-89 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10009755 [exp] 264 / 3e-83 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10014066 [exp] 212 / 1e-63 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10027897 [exp] 201 / 2e-59 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10002399 [exp] 150 / 7e-41 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10019850 [exp] 132 / 8e-35 AT4G34000 189 / 2e-57 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Lus10021369 [exp] 120 / 7e-30 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 120 / 7e-30 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008928 [exp] 115 / 7e-30 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 116 / 7e-29 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.002G125400.5 pacid=42778641 polypeptide=Potri.002G125400.5.p locus=Potri.002G125400 ID=Potri.002G125400.5.v4.1 annot-version=v4.1 ATGGGGACGAATTTCAACTTCAAGAACTTCCCAAATGACCCGTCAGATGCCGTTGGTTGCCGGCCACCGGGGAATTCTCCGCTGACCAGACAGTCATCGA TCTATTCGTTAACTTTTGACGAACTTCAAAACACAATGGGAGGATCATTAGGCAAGGACTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAATATATG GAGTGCAGAGGAGACACAGACCATGGCAACAGCCACCTCTACTGTGGTCGAAGAGGGTGGTGGTCTCCAGCGTCAGGGTTCGCTGACGCTGCCGCGGACG CTGAGTCAGAGGACGGTGGATGAGGTCTGGAAAGACATGTCAAAGGAATATGTTATTAATGGGACTAGTGCTGGAGCTGCTAATAATGTGCCCCAGAGGC AGCCCACTTTAGGAGAGATGACTTTGGAGGAGTTTTTGTTGAGAGCTGGGGTGGCGAGAGAGGATACTCAAGTGGCTCCAAAGGTTAATACTAATGGTGG GTTTTTTGGTGATTTATCACGGTCGGCCAATAATAGTTTAGCGATTGGTTTTCAGCAGAATAGGGGTGTAGGATTGAATAACGATAATACTAATCAGATC TCTTTGCAATCGTCTAATTTGCCTTTGAATGTTAACGGGGTTAGATCAAATCAGGCACAGGTGCAGCAGCAGCAGCAAATATTTCCTAAGCAGCCTAATA TGGGATATGTGACGCAGCCTAATAACGATAATACTAATCAGATATCTTTGCAATCTTCTAATTTGCCTTTGAATGTTAATGGGGTTAGATCAAATCAGGC ACAGGTGCAGCAGCAGCAGCAGCAGCAAATATTTCCCAAGCAGCCTAATATGGGATATGTGACGCAGATGCCTTTACAAAGTGGTCCTGGAATTAGAGGT GGAATGTTGGGGATTGGAGATCAAGGAATCGATAGCGGTTTGATGCAGGGTGGAGGGATGGGAGTGGTTGGATTGGGAGGTATTGCAACGGGGTCACCTG CGAACCAGCTGTCATCAGATGGGATTGGGAAGAGTAATGGGGATACATCTTCTGTATCTCCAGTGCCTTATGTATTCAGAGAAAGTGTAAGGGGAAGGAG ACCGGGTGGTGCTGTTGAGAAGGTGGTTGAGAGGAGGCAAAGGAGAATGATTAAGAACAGAGAGTCAGCTGCAAGGTCTCGTGCTCGCAAGCAGGCTTAT ACCATGGAATTGGAAGCAGAAGTGGCAAAGTTAAAAGAGGAAAACGAAGAATTGCGGAAGAAACAGGCGGAAATGATGGAAATACAGAAAAATCAGGTTG CGGAGATGATGAATATGCAGCAGGGTGGTAAGAAACGGTGCTTGAGACGAACTCAGACAGGTCCATGGTGA
AA sequence Show only first row Show all	>Potri.002G125400.5 pacid=42778641 polypeptide=Potri.002G125400.5.p locus=Potri.002G125400 ID=Potri.002G125400.5.v4.1 annot-version=v4.1 MGTNFNFKNFPNDPSDAVGCRPPGNSPLTRQSSIYSLTFDELQNTMGGSLGKDFGSMNMDELLKNIWSAEETQTMATATSTVVEEGGGLQRQGSLTLPRT LSQRTVDEVWKDMSKEYVINGTSAGAANNVPQRQPTLGEMTLEEFLLRAGVAREDTQVAPKVNTNGGFFGDLSRSANNSLAIGFQQNRGVGLNNDNTNQI SLQSSNLPLNVNGVRSNQAQVQQQQQIFPKQPNMGYVTQPNNDNTNQISLQSSNLPLNVNGVRSNQAQVQQQQQQQIFPKQPNMGYVTQMPLQSGPGIRG GMLGIGDQGIDSGLMQGGGMGVVGLGGIATGSPANQLSSDGIGKSNGDTSSVSPVPYVFRESVRGRRPGGAVEKVVERRQRRMIKNRESAARSRARKQAY TMELEAEVAKLKEENEELRKKQAEMMEIQKNQVAEMMNMQQGGKKRCLRRTQTGPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.002G125400 [exp]	0	1	ABF2.2
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.014G028200 [exp]	1.00	0.8974	Pt-ABF2.1
AT1G60420			DC1 domain-containing protein ...		Potri.002G017200 [exp]	4.00	0.8761
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.001G010500 [exp]	4.58	0.8195
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.012G002700 [exp]	5.19	0.8516
AT3G27250			unknown protein		Potri.001G334500 [exp]	5.29	0.8427
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.014G103000 [exp]	10.48	0.8384	Pt-ATHB.5
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Potri.006G013900 [exp]	12.32	0.8155
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.009G037300 [exp]	13.41	0.8071
AT5G41350			RING/U-box superfamily protein...		Potri.001G101700 [exp]	13.41	0.7457
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.008G059200 [exp]	13.74	0.7792

Compare expression of checked genes

Potri.002G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.