Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45230 209 / 9e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT3G46630 120 / 4e-34 Protein of unknown function (DUF3223) (.1) AT2G40030 97 / 3e-23 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G63020 52 / 1e-07 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT5G62440 45 / 5e-06 Protein of unknown function (DUF3223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028300 [exp] 305 / 1e-106 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G023400 [exp] 127 / 5e-37 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.014G023200 [exp] 120 / 7e-34 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1) Potri.003G196900 [exp] 107 / 8e-27 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 100 / 2e-24 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 64 / 8e-12 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.005G033100 [exp] 49 / 5e-07 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 42 / 5e-05 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 42 / 0.0001 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006488 [exp] 200 / 5e-65 AT1G45230 195 / 8e-63 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10009756 [exp] 197 / 1e-63 AT1G45230 193 / 3e-62 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10018738 [exp] 127 / 9e-37 AT3G46630 201 / 1e-65 Protein of unknown function (DUF3223) (.1) Lus10024797 [exp] 127 / 1e-36 AT3G46630 201 / 9e-66 Protein of unknown function (DUF3223) (.1) Lus10002748 [exp] 110 / 1e-27 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10016332 [exp] 109 / 3e-27 AT2G40030 1086 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10002955 [exp] 52 / 1e-07 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10006339 [exp] 50 / 3e-07 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10011903 [exp] 49 / 7e-07 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10021669 [exp] 44 / 1e-05 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [poplar] [flax] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Potri.002G125700.1 pacid=42777888 polypeptide=Potri.002G125700.1.p locus=Potri.002G125700 ID=Potri.002G125700.1.v4.1 annot-version=v4.1 ATGGCCTTGGCCATGGCTTCGTTATCTAAACCACCACCACCGCTATCCCTTCACGCGTTGTCAAACCCTATCTCTCTATTTTCCTCGCCGGCAGTGGTGT TATCTTTTCCGTTTAATCGAACAGCTTTCGCGAGTCCAAGTGCGCGCGCGATTAAGACAGGATCGGACAGTTCAGATTTGTTGAGGAAACCGATTGCACC GTCAGAGAAGGACTTGTTTGGAATTTCTGAAGAAGAAGAAGAGGACAGTGAAGGGGAAAGGGATGAAGAAGAAGAGGAAGGATTTGTGGATTGGGAGGAT AGGATTTTGGAGGATACGGTCCCACTTGTTGGGTTTGTTAGAATGATTCTTCATTCTGACAAATATGAAAGTGGAGACAGATTGAGTCAAGAGCATGACA GAACTATTGTGGATAGATTGCTTGCTTATCATCCAGATTTTGATAACAAGATTGGATGTGGAATTGATTATATTACAGTTGGGTATCATCCTGATTTTGC GGACTCGCGATGTTTGTTCATAGTTCGAAAAGATGGGCAAGCGGTTGACTTTTCTTATTGGAAATGCCTAAAGGGCTTGATCAAGAAGAACTATCCACTA TATGCAGACAGTTTCATTCTCAGACATTTTCGACGGTAG
AA sequence Show only first row Show all	>Potri.002G125700.1 pacid=42777888 polypeptide=Potri.002G125700.1.p locus=Potri.002G125700 ID=Potri.002G125700.1.v4.1 annot-version=v4.1 MALAMASLSKPPPPLSLHALSNPISLFSSPAVVLSFPFNRTAFASPSARAIKTGSDSSDLLRKPIAPSEKDLFGISEEEEEDSEGERDEEEEEGFVDWED RILEDTVPLVGFVRMILHSDKYESGDRLSQEHDRTIVDRLLAYHPDFDNKIGCGIDYITVGYHPDFADSRCLFIVRKDGQAVDFSYWKCLKGLIKKNYPL YADSFILRHFRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45230			Protein of unknown function (D...		Potri.002G125700 [exp]	0	1
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G138400 [exp]	1.00	0.9094
AT2G38570			unknown protein		Potri.006G109500 [exp]	2.00	0.8966
					Potri.009G125700 [exp]	8.00	0.8528
AT1G29120			Hydrolase-like protein family ...		Potri.011G065700 [exp]	10.90	0.8688
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Potri.011G082800 [exp]	11.40	0.8312
AT3G01920			DHBP synthase RibB-like alpha/...		Potri.001G330100 [exp]	12.48	0.8736
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Potri.003G126100 [exp]	14.14	0.8378
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024100 [exp]	23.23	0.8633
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.016G058700 [exp]	28.26	0.8370
AT2G15695			Protein of unknown function DU...		Potri.004G142000 [exp]	28.37	0.8399

Compare expression of checked genes

Potri.002G125700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.