Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09890 827 / 0 Protein kinase family protein (.1.2) AT3G23310 632 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 629 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT2G20470 621 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G03920 603 / 0 Protein kinase family protein (.1) AT4G33080 591 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT1G30640 585 / 0 Protein kinase family protein (.1) AT2G19400 581 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G17850 256 / 2e-74 Protein kinase superfamily protein (.1) AT1G48490 254 / 5e-74 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G028900 [exp] 972 / 0 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.008G167800 [exp] 639 / 0 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 638 / 0 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.010G070600 [exp] 637 / 0 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G036200 [exp] 625 / 0 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.011G157000 [exp] 618 / 0 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.006G146900 [exp] 608 / 0 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G224800 [exp] 605 / 0 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) Potri.002G263000 [exp] 266 / 3e-78 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042650 [exp] 913 / 0 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2) Lus10005707 [exp] 899 / 0 AT5G09890 853 / 0.0 Protein kinase family protein (.1.2) Lus10011814 [exp] 633 / 0 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10021176 [exp] 626 / 0 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10033911 [exp] 625 / 0 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10003541 [exp] 625 / 0 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031332 [exp] 267 / 3e-78 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10005470 [exp] 258 / 3e-76 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027196 [exp] 253 / 2e-73 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 251 / 1e-72 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [poplar] [flax] Pkinase_C Protein kinase C terminal domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G125800.1 pacid=42776770 polypeptide=Potri.002G125800.1.p locus=Potri.002G125800 ID=Potri.002G125800.1.v4.1 annot-version=v4.1 ATGGACGGTGGTGATGGGACGGTGAGGTTGGGGGCTTTGAACTTGAAGCCGGATCACAGCGGCTTCGATTCAGGCCCTGATGTGTCCGTTTCATCGCCGG TTACGAGACAAAAAGCTGCGGCTGCAAAACAGTTCATAGAGAATCATTATAAGAACCATCTGCAAGGACTGCAAGATCGTAAAGAGAGGCGACGAGCACT TCAAATGAGAGCACAAGAAGCTCAGGTTTCAAATGAAGAACAAGAGGAGATGCTTAGGAATTTGGAGCGCAGAGAAACAGAGTATATGAGGCTGCAAAGG CGTAAAATTGGAATTGATGATTTTGAACAGTTAACTGTGATTGGAAAAGGTGCATTTGGGGAGGTTAGGTTATGCAGAGCCAAGGACACCGGAGAGATTT TTGCTATGAAGAAATTGAAGAAGTCAGAGATGCTTAGCCGTGGACAGGTTGAGCACGTCCGATCAGAGAGGAACTTACTGGCGGAGGTTGATAGTCGGTG CATAGTAAAACTTTTCTACTCTTTTCAAGATTCTGATTTCTTGTATCTGATTATGGAGTATTTACCTGGTGGAGACATAATGACATTATTGATGAGAGAA GATATTCTTTCTGAAGATGTTGCACGTTTTTACATAGCGGAGAGCATTCTAGCCATACAATCAATTCACCAACACAATTATGTTCACAGGGACATAAAAC CAGATAACCTGATACTGGACAAAAATGGCCATTTAAAGCTTTCAGATTTTGGCTTGTGCAAACCTTTGGATGATAAGTATTCAAATTTACTGGAAAATGA AAATTTTTCTACCCAGGAAGGAAGAAATGAATCTGAAGGGCATTCTACCAGTGACAGACCCCCCTGGTTGATGCCGAAAGAAAAATTGCAACAATGGAAA CGCAATCGACGTGCACTGGCTTATTCAACAGTTGGAACTCTTGATTATATGGCTCCTGAAGTGCTACTAAAGAAGGGGTATGGAATGGAGTGTGATTGGT GGTCCCTTGGTGCTATCATGTATGAGATGCTTATAGGCTATCCTCCCTTCTGCTCTGATGAACCAAGGATCACATGCCGCAAGATAATCAATTGGAAAAC ATGCCTTAAATTCCCCGAGGAACCAAAGATATCAAGCGAGGCCAAAGATCTTATTTGCCACTTGCTCTGTGATGTTGAAACGAGGCTGGGGACCAGAGGA GTTGAAGAATTGAAGGTGCATCCATGGTTCAGGAGCACTCAGTGGGATTTTCTGTATGAATTGGAAGCTGCATATAAGCCTACAGTCAATGGAGACTTGG ATACTCAGAACTTTGAGAAGTTTCCTGATCTGGAAGGCCCACCATCCACAATACCAAGTGTAGGGCCTTGGAGGAAGATGTTGACATCAAAAGATACCAA TTTTATTGGATTTACTTATAAGAAATCGGACGTCCTTAAATCAATGCAAAGTTCAGGTACAGACATGAAATTGAATGACTCTTCGAAGGCTCCATCTCTA ATTTCCTTGTTAGGTCAGATTGACCTGCAAGAGACTGCAACATCAGAAGGTGAGCAGAAGCCGGAAACATGA
AA sequence Show only first row Show all	>Potri.002G125800.1 pacid=42776770 polypeptide=Potri.002G125800.1.p locus=Potri.002G125800 ID=Potri.002G125800.1.v4.1 annot-version=v4.1 MDGGDGTVRLGALNLKPDHSGFDSGPDVSVSSPVTRQKAAAAKQFIENHYKNHLQGLQDRKERRRALQMRAQEAQVSNEEQEEMLRNLERRETEYMRLQR RKIGIDDFEQLTVIGKGAFGEVRLCRAKDTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSDFLYLIMEYLPGGDIMTLLMRE DILSEDVARFYIAESILAIQSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSNLLENENFSTQEGRNESEGHSTSDRPPWLMPKEKLQQWK RNRRALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLIGYPPFCSDEPRITCRKIINWKTCLKFPEEPKISSEAKDLICHLLCDVETRLGTRG VEELKVHPWFRSTQWDFLYELEAAYKPTVNGDLDTQNFEKFPDLEGPPSTIPSVGPWRKMLTSKDTNFIGFTYKKSDVLKSMQSSGTDMKLNDSSKAPSL ISLLGQIDLQETATSEGEQKPET

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09890			Protein kinase family protein ...		Potri.002G125800 [exp]	0	1
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.005G089200 [exp]	13.07	0.7458	Pt-VIIIA.1
AT3G04100	MADS	AGL57	AGAMOUS-like 57 (.1)		Potri.009G045900 [exp]	33.58	0.7251
AT4G29680			Alkaline-phosphatase-like fami...		Potri.006G150900 [exp]	42.60	0.7073
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.015G129100 [exp]	67.76	0.6900
					Potri.016G141900 [exp]	79.52	0.6453
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.010G049700 [exp]	81.38	0.6676
AT4G34200		EDA9	embryo sac development arrest ...		Potri.001G300900 [exp]	94.81	0.6734
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.014G151300 [exp]	96.49	0.6729
AT5G32440			Ubiquitin system component Cue...		Potri.018G127200 [exp]	106.41	0.6006
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.015G125100 [exp]	119.47	0.6323	Pt-MP2.1

Compare expression of checked genes

Potri.002G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.