Plant FIBer expression Database

Potri.002G125900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42900 107 / 7e-28 COR27 cold regulated gene 27 (.1.2.3)
AT4G33980 59 / 3e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G029000
[exp]
332 / 1e-115 AT5G42900 121 / 3e-33 cold regulated gene 27 (.1.2.3)
Potri.009G101400
[exp]
85 / 2e-19 AT5G42900 57 / 2e-09 cold regulated gene 27 (.1.2.3)
Potri.004G140701
[exp]
73 / 3e-15 AT4G33980 48 / 9e-07 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G125900.1 pacid=42777856 polypeptide=Potri.002G125900.1.p locus=Potri.002G125900 ID=Potri.002G125900.1.v4.1 annot-version=v4.1
ATGCTGTATATGGATGGTTATAGAGAAAGTGAAAGTCGAACGAGATCAGAAACGTCTGGGTTAACTGGTCACGAGTCAGTCGAGTTGGCTCAATTACAGG
ATTCACCGATGATAGAATCCATGTCTTCAGAATGGACAGATGAGAAGCACAAACTTTATCTTAAATCCATGGAGGCTTCATTTGTTAATCAATTATACAA
TTCGATAGATCTTCTTGGTTGGCGTTCCCAGAAGGGGAGGCCAGTTCCAAACTTGTCTGGGGAAGTCAATTGTAGCACCTGTAGACCTTCTGGCCAGTTT
AAGGTTCTTCGACGTGGCGGCTGGCAGAAAATCAATTTTCGAAGACATGAATCTCAACTAAGCTCAGCGAAGGACTCCCGTGGGTATTTAACAAGCCCAT
GGATTCAACAATTTACGCCTGCAAGAAAACCAGAAGGTGCAACATCTCCTGCTCTTCAAGAATGTGCTATCCAAAGTCGAGGAATCAATTTAAAGTGGAA
GAAAGCAGTTCTCTGCTGTCCAGCAACTAATTCAAAACTTTCTCATTTTGGCAACTCTTTTTCATGTCATCGTGATTTCGTTGAAAGCAACACAGAGATG
TCAGGCCAGAACTTTGTTGACGAAGACATCGAAAGTGAAAGTGCAAGCAGTTCTTTCAGCTCAAAAAGGTTGAAAACTCTGAAAACTGATCCTTCGAGTA
GTGACCAGGTTGTTCCCCACAGCAAGACTCCTGTGGAAGAAGAGGTTACTGAGTGTATTTCTGCAGCTAAATAA
AA sequence
>Potri.002G125900.1 pacid=42777856 polypeptide=Potri.002G125900.1.p locus=Potri.002G125900 ID=Potri.002G125900.1.v4.1 annot-version=v4.1
MLYMDGYRESESRTRSETSGLTGHESVELAQLQDSPMIESMSSEWTDEKHKLYLKSMEASFVNQLYNSIDLLGWRSQKGRPVPNLSGEVNCSTCRPSGQF
KVLRRGGWQKINFRRHESQLSSAKDSRGYLTSPWIQQFTPARKPEGATSPALQECAIQSRGINLKWKKAVLCCPATNSKLSHFGNSFSCHRDFVESNTEM
SGQNFVDEDIESESASSSFSSKRLKTLKTDPSSSDQVVPHSKTPVEEEVTECISAAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42900 COR27 cold regulated gene 27 (.1.2.3... Potri.002G125900
[exp]
0 1
AT5G35460 unknown protein Potri.006G145600
[exp]
1.00 0.8827
AT1G68050 ADO3, FKF1 "flavin-binding, kelch repeat,... Potri.010G105700
[exp]
6.24 0.8188 FKF1.1
AT2G27090 Protein of unknown function (D... Potri.009G159000
[exp]
9.48 0.8376
AT5G42900 COR27 cold regulated gene 27 (.1.2.3... Potri.009G101400
[exp]
9.79 0.8126
AT2G24100 ASG1 ALTERED SEED GERMINATION 1, un... Potri.001G041800
[exp]
10.72 0.8452
AT1G11340 S-locus lectin protein kinase ... Potri.011G036466
[exp]
11.48 0.8211
AT1G11340 S-locus lectin protein kinase ... Potri.011G035800
[exp]
13.41 0.8645
AT2G46680 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX ... Potri.014G103000
[exp]
18.16 0.8239 Pt-ATHB.5
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.011G118800
[exp]
20.49 0.8163
AT4G27290 S-locus lectin protein kinase ... Potri.011G035913
[exp]
21.00 0.8253

Potri.002G125900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.