Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17650 288 / 2e-98 Polyketide cyclase / dehydrase and lipid transport protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009758 [exp] 335 / 4e-117 AT4G17650 288 / 1e-98 Polyketide cyclase / dehydrase and lipid transport protein (.1) Lus10042651 [exp] 292 / 3e-100 AT4G17650 228 / 4e-75 Polyketide cyclase / dehydrase and lipid transport protein (.1) Lus10021724 [exp] 290 / 4e-99 AT4G17650 230 / 1e-75 Polyketide cyclase / dehydrase and lipid transport protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF03364 [poplar] [flax] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Potri.002G126000.1 pacid=42777601 polypeptide=Potri.002G126000.1.p locus=Potri.002G126000 ID=Potri.002G126000.1.v4.1 annot-version=v4.1 ATGTCAACCTCGAAAGCAATCCGTTCCTTAATAACCCGTGAAAATGTATGGAAACATCTCTTCAGGTCCGCAATAAATCACAATAGCCACAAATTCGATC AAACTCGATGCTTGAGTAGCCTTGCCGGTATCTTGAATCCATCAATTAGTAGAGGAACTTACAATAACCGGAAAGATTTTGATCTCGCATCAGGAAATTT GTATAATAACACTACTATAAAACGAGGGTTTCTTGGCTGCGGTGACGGTGAAGAAGGTAGTGTTTTATCGAAGGTTTACGAAGAGAGGCGCGTGTTGGGG TATTCTCCGGAGCAGTTATTTGATGTGGTTGCTGCCGTTGATCTGTATCATGGGTTTGTACCGTGGTGTCAGCGGTCGGAGATACTGAAACAGTACCCAG ATGGATCATTTGATGCGGAGTTGGAGATTGGTTTTAAGTTTCTCGTCGAGAGCTATGTTTCTCATGTAGAATTAAATAGACCGAAGTTTCTCAAGACAAC TTCATCAGAGAGTAACCTCTTTGACCATTTGATAAATATTTGGGAATTCAATCCGGGGCCAGTTCCAGGATCTTGTGAACTTTATTTTTTAGTGGACTTC AAATTCCAGTCACCACTTTACAGACAGGTGGCATCCATGTTTTTCAAGGAGGTAGTCTCCCGACTGGTTGGTTCGTTCGATGAGCGCTGCCGATTGATAT ATGGACCAGGGGTCTCAGTCCTTGAGAAATCCTACGGAGAGAAGGCATAA
AA sequence Show only first row Show all	>Potri.002G126000.1 pacid=42777601 polypeptide=Potri.002G126000.1.p locus=Potri.002G126000 ID=Potri.002G126000.1.v4.1 annot-version=v4.1 MSTSKAIRSLITRENVWKHLFRSAINHNSHKFDQTRCLSSLAGILNPSISRGTYNNRKDFDLASGNLYNNTTIKRGFLGCGDGEEGSVLSKVYEERRVLG YSPEQLFDVVAAVDLYHGFVPWCQRSEILKQYPDGSFDAELEIGFKFLVESYVSHVELNRPKFLKTTSSESNLFDHLINIWEFNPGPVPGSCELYFLVDF KFQSPLYRQVASMFFKEVVSRLVGSFDERCRLIYGPGVSVLEKSYGEKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17650			Polyketide cyclase / dehydrase...		Potri.002G126000 [exp]	0	1
AT3G02420			unknown protein		Potri.017G110600 [exp]	3.46	0.7649
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Potri.019G000900 [exp]	6.00	0.7329
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.010G199000 [exp]	6.70	0.7535
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	7.74	0.7319	ATFYPP3.2
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	7.74	0.7286	AJH1.3
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.015G108900 [exp]	8.83	0.7052
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	9.16	0.7141
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	9.48	0.7444
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	12.96	0.7064
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	15.45	0.7786

Compare expression of checked genes

Potri.002G126000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.