Plant FIBer expression Database

Potri.002G126300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25000 591 / 0 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1)
AT1G69830 379 / 1e-123 ATAMY3, AMY3 alpha-amylase-like 3 (.1)
AT1G76130 357 / 1e-120 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G029400
[exp]
761 / 0 AT4G25000 580 / 0.0 alpha-amylase-like (.1)
Potri.017G093200
[exp]
394 / 2e-128 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1)
Potri.010G092900
[exp]
378 / 8e-123 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1)
Potri.002G014300
[exp]
362 / 4e-122 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042655
[exp]
644 / 0 AT4G25000 567 / 0.0 alpha-amylase-like (.1)
Lus10021728
[exp]
633 / 0 AT4G25000 563 / 0.0 alpha-amylase-like (.1)
Lus10036717
[exp]
387 / 2e-126 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1)
Lus10037211
[exp]
381 / 3e-124 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1)
Lus10013270
[exp]
380 / 8e-124 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1)
Lus10030793
[exp]
378 / 2e-120 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1)
Lus10021836
[exp]
352 / 2e-118 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00128 Alpha-amylase Alpha amylase, catalytic domain
CL0369 GHD PF07821 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain
Representative CDS sequence
>Potri.002G126300.1 pacid=42778950 polypeptide=Potri.002G126300.1.p locus=Potri.002G126300 ID=Potri.002G126300.1.v4.1 annot-version=v4.1
ATGAGATTTCTCACTTTCTGCTTCTTCTCTCTCTTCCTCTCAGTTTTCCCTTTGTTCACTTCTTCTGCTTTGTTATTTCAGGGGTTCAACTGGGAGTCAT
GTAATCAGGCAGGAGGATGGTACAACTCACTAAAGAACTTGGTTCCTGATTTGGCTAATGCTGGAATTACTCATGTCTGGCTTCCTCCAGCCTCTCAGTC
AGTTGCACCGCAAGGATATATGCCAGGCAGGCTGTATGATCTGAGTGCATCAAAATATGGATCTCAGGGTGAATTGAAATCACTAATCGGGGCTTTCCAT
CAGAAGGGAATTAAATGCCTGGCAGACATTGTCATAAACCATAGAACTGCTGAGAAGCAAGATGGGAGAGGAATATGGTGCATTTTTGAAGGTGGAACTT
CTGATGATCGCCTTGACTGGGGGCCGTCCCTCATTTGCAGTGATGACACTGCCTATTCTGATGGCAAAGGAAATCCTGATACAGGAGGTGACTTCGGAGG
TGCCCCTGATATTGACCACCTCAATCCTAGAGTTCAGAAGGAGTTATCAGATTGGATGAACTGGTTAAAGTCTGAAATAGGATTTGATGGATGGCGATTC
GACTTTGTTAAGGGCTATGCTCCTAGTATTACCAAAATTTATATGGAAAATACTTCACCAGATTTTGCAGTTGGTGAAAAATGGGACTCTCTTGCTTATG
GCCAGGATGGAAAGCCTGACTATAACCAGGATGCGCACCGTGGTGGACTAAAAGATTGGATTCAAGCAGCTGGTGGTGCTGTCACAGCATTTGATTTTAC
AACAAAAGGGATACTTCAAGCTGCTGTGCAAGGAGAGTTATGGAGGTTGAAGGACTCAAATGGAAAGCCACCAGGATTGATTGGCCTGTTGCCACAAAAT
GCTGTGACTTTCATTGACAATCATGACACCGGGTCTACTCAAAAGCTTTGGCCATTTCCATCAGATAAAGTCATGCAGGGATATGCCTACATTCTCACTC
ATCCTGGGACCCCATCCATTTTTTATGATCACTTTTTTGACTGGGGCCTAAAGGAAGAAATTGGCAAATTGGCAACAATTAGGAAAACTTCTGGGATTGG
TTCTGCAAGCACTGTGAATATTTTAGCCTCTGATGCTGATCTTTATGTGGCAGCAATCGATGGTAACATGATCATGAAGATTGGACCTAAGATGGATCTT
GGAAACCTTATTCCCTCAAACTTCCAGGTTGCTGCATCTGGAACAGATTATTGTGTGTGGGTAAAAAAGTAA
AA sequence
>Potri.002G126300.1 pacid=42778950 polypeptide=Potri.002G126300.1.p locus=Potri.002G126300 ID=Potri.002G126300.1.v4.1 annot-version=v4.1
MRFLTFCFFSLFLSVFPLFTSSALLFQGFNWESCNQAGGWYNSLKNLVPDLANAGITHVWLPPASQSVAPQGYMPGRLYDLSASKYGSQGELKSLIGAFH
QKGIKCLADIVINHRTAEKQDGRGIWCIFEGGTSDDRLDWGPSLICSDDTAYSDGKGNPDTGGDFGGAPDIDHLNPRVQKELSDWMNWLKSEIGFDGWRF
DFVKGYAPSITKIYMENTSPDFAVGEKWDSLAYGQDGKPDYNQDAHRGGLKDWIQAAGGAVTAFDFTTKGILQAAVQGELWRLKDSNGKPPGLIGLLPQN
AVTFIDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEEIGKLATIRKTSGIGSASTVNILASDADLYVAAIDGNMIMKIGPKMDL
GNLIPSNFQVAASGTDYCVWVKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G25000 AMY1, AMY3, ATA... alpha-amylase-like (.1) Potri.002G126300
[exp]
0 1
AT2G30080 ATZIP6, ZIP6 ZIP metal ion transporter fami... Potri.001G279300
[exp]
4.24 0.8506 ZIP6.3
AT2G31130 unknown protein Potri.019G089900
[exp]
5.65 0.8142
AT1G68300 Adenine nucleotide alpha hydro... Potri.008G121900
[exp]
7.34 0.8600
AT2G21620 RD2 Adenine nucleotide alpha hydro... Potri.004G156200
[exp]
9.79 0.8668 Pt-RD2.2
AT2G36690 2-oxoglutarate (2OG) and Fe(II... Potri.017G049000
[exp]
13.11 0.8633
AT2G24762 ATGDU4 glutamine dumper 4 (.1) Potri.004G108680
[exp]
15.16 0.8089
AT3G03980 NAD(P)-binding Rossmann-fold s... Potri.013G059100
[exp]
17.20 0.8524
AT4G38800 ATMTN1, ATMTAN1 ARABIDOPSIS METHYLTHIOADENOSIN... Potri.009G128700
[exp]
26.98 0.7889
AT5G04250 Cysteine proteinases superfami... Potri.008G036900
[exp]
27.74 0.8531
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Potri.014G019300
[exp]
31.38 0.8628

Potri.002G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.