Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33400 915 / 0 Vacuolar import/degradation, Vid27-related protein (.1) AT3G19240 831 / 0 Vacuolar import/degradation, Vid27-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029600 [exp] 1197 / 0 AT4G33400 894 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.009G102000 [exp] 877 / 0 AT3G19240 877 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.004G141300 [exp] 868 / 0 AT3G19240 893 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042656 [exp] 1037 / 0 AT4G33400 903 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10021729 [exp] 1036 / 0 AT4G33400 905 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10019860 [exp] 862 / 0 AT3G19240 908 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10014053 [exp] 858 / 0 AT3G19240 900 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF08553 [poplar] [flax] VID27 VID27 C-terminal WD40-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G126500.1 pacid=42780041 polypeptide=Potri.002G126500.1.p locus=Potri.002G126500 ID=Potri.002G126500.1.v4.1 annot-version=v4.1 ATGGGAGGCTCTCAAAGCCGTGAAGACCTGGAGCTCTCAGACTCGGACACAGAGGGCCAACAAGAAGAAGAAACGGAAGAAGAAGAAAACTACCAAGATG TCAGCAATGAAACCCCAGAAAAATCATCTTCCACAGGAAGAAACAGACCCAAAACCCCATCTTCTCTTGATGAAGTCGAATCCAAGCTTAAAGCCCTAAA ACTCAAATACCCCTCAACAATAACCCGAACCCAGCAGAGTCCTAACTCTAATTTTAAAAATGGTGTCAAACTTTACCTTCATATCGGCGGTAACACCCCA AAAGCCAAATGGGTTACTTCAGAGAAGTTGACTTCTTATTCTTTCATCAAGACCTCAAAAATTAATGGTCAAGATGAAGAGGAGGACTCGGAGTCAGAAT CTGAAGGAGTTTCTTGGTGGGTTTTGAAGGTTAGTACAAAAATTAGAGCGAAAGTCGCTGTTGAGATGCAATTGAAAACATTTAAGGAACAGCGCCGCGT TGATTTTGTTGCTGACGGTGTTTGGGCTATAAAGTTTTTTAGTGATGAAGATTATAAGGTTTTTAATAGCAAGTACCAGGAATGTTTGTTTGAGAATACT TTTGGGTACGAGTCCAATGAAGCAAACAAGGTTAAGGTTTACGGGAAGGATTTTGTTGGGTGGGCGAACCCGGAAAAGGCAGATGATTCTATGTGGGAGG ATGCAGAGGATGATTTCTTGAAAAGCCCTGGATCTGTGACCCCTGTGAGGGGAAATCAAGATCTGCAAGAGGGATTTGAGGAGGCAGCCAATGGAGGGAT ACAGAGCTTGGCATTGGGTGCGCTGGATAACAGTTTCTTGGTGGGTAGTTCAGGGATTCAGGTCGTTAAGAACTTTAGCCACGGGATTCATGGAAAAGGT GCTTATGTCAATTTTGGAAGTGGGAATCATAGGAGTTCTTCGAATTTGGTGCATTCGACTCCTAAAAAGGCACTTCTTATGCGGGCTGAGACTAATATGT TGCTTATGAGTCCGATGAATGAAGGGAAATTGCATTCTACTGGTTTGCATCAACTTGATATAGAGACTGGGAAGATTATTACTGAGTGGAGGTTTGAAAA GGATGGAACTGATATTACCATGAGGGATATTGCAAATGATAGCAAGGGAGCACAGTTGGATCCGTCAGGATCTACATTTTTGGGATTGGATGACAATAGG CTTTGCAGGTGGGATATGCGTGACCGGCATGGGATTGTTCAAAATCTTGCTACAGCTAATACTCCTGTTCTGAATTGGACTCAAGGACATCAGTTTTCAA GAGGGACTAACTTCCAGTGCTTTGCGAGCACAGGTGATGGATCAATTGTTGTTGGGTCTCGTGATGGGAAGATTCGATTGTATTCAGGCAATTCGATGCG GCAGGCAAAAACAGCTTTTCCTGGCCTGGGATCACCTATTACTCATGTTGATGTTACCTTTGATGGGAAGTGGATATTGGGCACCACCGATACATATTTG ATCCTTATCTGCACTCTTTTCACAGACAAGGATGGTAAGATGAAGACTGGTTTTAATGGTCGTATGGGTAACAGGATTGCAGCTCCGAGATTGTTGAAGC TGACTCCTCTGGATTCACATCTAGCTGGAGTTAATAACAAGTTCCAAAAGGCTCAGTTCTCTTGGGTCACAGAGAATGGGAAGCAGGAGCGCCATTTGGT TGCAACAGCTGGCAAGTTTAGTGCGATATGGAACTTCCAGCAGGTAAAGAATGGTTCCCATGAGTGCTATCGTAATCAAGAGGGCTTGAAGAGCTGTTAC TGCTACAAGGTAGTCCTTAAGGATGACTCCATTGTTGATAGCCGTTTCATGCATGACAAGTTTGCAGTCAGCGATTCTCCTGAGGCTCCACTGGTGATTG CAACCCCCATGAAAGTCAGCTCCTTCAGCATATCCAGCAGGCGCTGA
AA sequence Show only first row Show all	>Potri.002G126500.1 pacid=42780041 polypeptide=Potri.002G126500.1.p locus=Potri.002G126500 ID=Potri.002G126500.1.v4.1 annot-version=v4.1 MGGSQSREDLELSDSDTEGQQEEETEEEENYQDVSNETPEKSSSTGRNRPKTPSSLDEVESKLKALKLKYPSTITRTQQSPNSNFKNGVKLYLHIGGNTP KAKWVTSEKLTSYSFIKTSKINGQDEEEDSESESEGVSWWVLKVSTKIRAKVAVEMQLKTFKEQRRVDFVADGVWAIKFFSDEDYKVFNSKYQECLFENT FGYESNEANKVKVYGKDFVGWANPEKADDSMWEDAEDDFLKSPGSVTPVRGNQDLQEGFEEAANGGIQSLALGALDNSFLVGSSGIQVVKNFSHGIHGKG AYVNFGSGNHRSSSNLVHSTPKKALLMRAETNMLLMSPMNEGKLHSTGLHQLDIETGKIITEWRFEKDGTDITMRDIANDSKGAQLDPSGSTFLGLDDNR LCRWDMRDRHGIVQNLATANTPVLNWTQGHQFSRGTNFQCFASTGDGSIVVGSRDGKIRLYSGNSMRQAKTAFPGLGSPITHVDVTFDGKWILGTTDTYL ILICTLFTDKDGKMKTGFNGRMGNRIAAPRLLKLTPLDSHLAGVNNKFQKAQFSWVTENGKQERHLVATAGKFSAIWNFQQVKNGSHECYRNQEGLKSCY CYKVVLKDDSIVDSRFMHDKFAVSDSPEAPLVIATPMKVSSFSISSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	0	1
AT1G54385			ARM repeat superfamily protein...		Potri.013G058700 [exp]	1.41	0.9377
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	1.73	0.9460
AT5G27670		HTA7	histone H2A 7 (.1)		Potri.005G026500 [exp]	3.87	0.9375	HTA914
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Potri.016G070800 [exp]	4.00	0.9135
AT1G54385			ARM repeat superfamily protein...		Potri.019G033900 [exp]	4.89	0.9366
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	5.47	0.9339
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.017G063900 [exp]	5.83	0.9133
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.019G040000 [exp]	7.21	0.8885
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.014G025800 [exp]	8.12	0.8990	ALC.2
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	8.36	0.9266

Compare expression of checked genes

Potri.002G126500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.