Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26570 694 / 0 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT4G33390 561 / 0 Plant protein of unknown function (DUF827) (.1) AT5G42880 424 / 2e-136 Plant protein of unknown function (DUF827) (.1) AT1G45545 321 / 3e-97 Plant protein of unknown function (DUF827) (.1) AT2G38370 69 / 7e-12 Plant protein of unknown function (DUF827) (.1) AT3G51720 54 / 5e-07 Plant protein of unknown function (DUF827) (.1) AT5G55860 52 / 2e-06 Plant protein of unknown function (DUF827) (.1) AT2G40480 49 / 1e-05 Plant protein of unknown function (DUF827) (.1) AT1G12150 48 / 3e-05 Plant protein of unknown function (DUF827) (.1) AT4G17210 47 / 4e-05 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029800 [exp] 1150 / 0 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.016G133300 [exp] 80 / 3e-15 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1) Potri.019G049201 [exp] 63 / 7e-10 AT2G40480 358 / 3e-117 Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 57 / 6e-08 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.016G005200 [exp] 45 / 0.0002 AT5G55860 208 / 2e-59 Plant protein of unknown function (DUF827) (.1) Potri.006G004100 [exp] 44 / 0.0004 AT1G12150 293 / 2e-92 Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035778 [exp] 821 / 0 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 804 / 0 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10025249 [exp] 74 / 4e-13 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1) Lus10009099 [exp] 74 / 4e-13 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 67 / 4e-11 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 61 / 5e-09 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10034211 [exp] 54 / 3e-07 AT2G40480 385 / 1e-128 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [poplar] [flax] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Potri.002G126700.2 pacid=42778343 polypeptide=Potri.002G126700.2.p locus=Potri.002G126700 ID=Potri.002G126700.2.v4.1 annot-version=v4.1 ATGGAGGATGTGAAAATTACTGAAGTTATATCTCCTCTGGAACCTTCTTCAACATCCCAAGATAATGGTCCTTCTCATGGTGAAGCTTCATCAAGCCATG CGACAAATGCAAATGTAGAACTTGATCAAGTTGCCATGAAAGACGATTCAGTTGATAAAACAGAGATATACCACCAAGGTGCATTGAAGGATGATTCCAA ATCAGAAGCAACACAAAATGTGCTGAATGTACAGGATGAATCTCGAGAGAAAACTGCAGGCGTCAAAATTTCCTCGAATGGTCCACAAGATCAAGAGAAA ACCGAAGACATACAGAATTCCTCAGATGGACAGAAATCTCAAAGAAAAACTGAACCCGTACCTAATTCTTCTGGTGTACGGCAACCTCAAGATCCTATCA GCAGTCCTCATGTCCATGTTGATGATGGTATACCTGCTACTTCCTCTCCTATTGAAAGAGCACAATTCGAGGAACATGCTCTGCCCCATGTAAAGGTTAG AGTGCAGCAAGATGAGCTTGCTTCTCCTCATGCAAATGTTGCCAGTCCTGATTTCAGGACACCGAATTCTACTGATTCTCCTCGGCTTTTTAAGCAGAGT GACATGAACAGAGGTCTAATTGATACGGCAGCACCTTTTGAATCTGTTAAAGAAGCTGTTTCCAAGTTTGGAGGAATTGTTGATTGGAAAGCCCATAGAA TCCAGACTGTAGAGAGACGCAAACTTGTAGACCAAGAACTAGAGACGGTACAGGTGGAGATGCCTGAGTACAAGAAACGGTCAGAGGCTGCTGAAGAGGA AAAAATACAAGTTCTTAAGGAGCTGGACAGCACTAAGAGACTTATTGAAGAGCTAAAGCTCAATCTGGAGAGGGCACAGACTGAAGAGCATCAGGCAAAA CAAGATTCTGAGCTTGCCAAGCTCAGGGTGGAAGAAATGGAACAGGGGATTGCTGATGAAGCTAGTGTTGCAGCCAAGGCACAACTTGAGGTTGCTAAAG CCAGGTACTCAGCTGCGGTGTCAGAACTAAAGACTGTTAATGATGAGGTGGAAGCACTGCACAAGGAATATGCTTCTTTGGTCAGTGAGAAAGATGAAGC TGTTAAAAAAGCTGAAGATGCTGTTTCTGCATCCAGGGAAGTTGAGAAGACTGTAGAGGAACTTACAATCGAGCTGATTGCTACCAAGGAATCCTTAGAG TCTGCGCATGCTGCTCATATGGAAGCAGAGGAGCAAAGAATAGGAGCAACCATGGCCAAGGAGCAAGATTCTCTTCATTGGGAGAAGGAGTTAAAGCAAG CAGAAGAGGAGCTCCAAAGACTTAACCAACAAATTCTTTCAGCAAAGGATCTCAAATCAAAACTAAACACTGCTTCAGCTTTGCTCGTTGATTTGAAAGC TGAACTAGCAGCTTATATGGAATCTAAAACAAAGGAGGGAACTGAAGGAAAACCAAAAGCTGAGCAGCAGGAACCAGAGAAAACAACTCACACCGACATA CAAGCAGCAGTTGCTTCAGCAAAGAAGGAACTGGAAGAAGTAAAACTCAACATTGAGAAAGCAACTGCAGAAGTAAATTGCTTGAAGGTGGCTGCCATAT CGTTACAAACAGAGCTGGAAAAAGAAAAATCATTGTTTTCTGCAATCAAGCAGAGAGAAGGAATGGCCTCAGTAACAGTTGCTGCTCTTCAGGCTGAGCT GGACAAGACTAGGTCGGAAATAGCCCTGGTTCAGATGGAAGAGAAAGAAGCCAGAGAAAAGACAGTTGAGATTCCCAAGCAACTGCAACTAGCAGCGGAA GCAGCTGATGAGGCCAAGTCACTCGCTCAAATGGCTCGTGAAGAGCTATGCAAAGCGAAGGAAGAAGCAGAACAAGCAAAAGCTGGTGCAAGTACGATGG AGAGTAGATTACTTGCAGCTCAAAAGGAAATAGAAGCTGCCAGAGCCTCTGAAAAATTGGCTTTAGCAGCGATCAAAGCTTTGGAAGAGAGTGAATCAGC TCAAAGCACCAATAATGTGGATTTACCTACCAGTGTAACACTCTCTCTAGAAGAGTACTATGAGCTCAGCAAGCGTTCCCATGAAGCAGAGGAGCAGGCC AACCTGAGGGTAGCAACTGCTATTTCTCAGATCGAAGCAGCCAAGGAATCAGAGTCAAGAACCGCCGAGAAGTTGGAACGAGTGAATCAAGAGATGACCG CAAGAAAGGAAGCTCTGAAAATTGCATTGGATAAGGCTGAGCAGGCGAAGGAAGGGAAGTTGGGTGTAGAACAGGAGTTGAGAAAGTGGAGGGCTGAGAA TGAGCAACGACGTAGGGCTAGCAATTCTGGTCTGGGAGCTGCAAACCCCAATAAAAGCCCAAGGGAAAGCTTCGAGGTCAGGAAAGAATCAAAGAGTGTT GATCGTGTACTGGATGCCGCCGTGGATTATGTTTCAAATCCAAAATCAAATGTACCTGGAAGTAACGCTGGAACCGATTCCTCTCCAGAAGTAAAGGCTC CAAGGAAGAAGAAGAAATCGCTGTTCCCGCGATTTTTATTGTTTTTTGCGAGGAAAAAATCACATCCTTCCAAGACAGGATAA
AA sequence Show only first row Show all	>Potri.002G126700.2 pacid=42778343 polypeptide=Potri.002G126700.2.p locus=Potri.002G126700 ID=Potri.002G126700.2.v4.1 annot-version=v4.1 MEDVKITEVISPLEPSSTSQDNGPSHGEASSSHATNANVELDQVAMKDDSVDKTEIYHQGALKDDSKSEATQNVLNVQDESREKTAGVKISSNGPQDQEK TEDIQNSSDGQKSQRKTEPVPNSSGVRQPQDPISSPHVHVDDGIPATSSPIERAQFEEHALPHVKVRVQQDELASPHANVASPDFRTPNSTDSPRLFKQS DMNRGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKLVDQELETVQVEMPEYKKRSEAAEEEKIQVLKELDSTKRLIEELKLNLERAQTEEHQAK QDSELAKLRVEEMEQGIADEASVAAKAQLEVAKARYSAAVSELKTVNDEVEALHKEYASLVSEKDEAVKKAEDAVSASREVEKTVEELTIELIATKESLE SAHAAHMEAEEQRIGATMAKEQDSLHWEKELKQAEEELQRLNQQILSAKDLKSKLNTASALLVDLKAELAAYMESKTKEGTEGKPKAEQQEPEKTTHTDI QAAVASAKKELEEVKLNIEKATAEVNCLKVAAISLQTELEKEKSLFSAIKQREGMASVTVAALQAELDKTRSEIALVQMEEKEAREKTVEIPKQLQLAAE AADEAKSLAQMAREELCKAKEEAEQAKAGASTMESRLLAAQKEIEAARASEKLALAAIKALEESESAQSTNNVDLPTSVTLSLEEYYELSKRSHEAEEQA NLRVATAISQIEAAKESESRTAEKLERVNQEMTARKEALKIALDKAEQAKEGKLGVEQELRKWRAENEQRRRASNSGLGAANPNKSPRESFEVRKESKSV DRVLDAAVDYVSNPKSNVPGSNAGTDSSPEVKAPRKKKKSLFPRFLLFFARKKSHPSKTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.002G126700 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413700 [exp]	3.00	0.8617
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Potri.004G047500 [exp]	5.91	0.8957
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184400 [exp]	10.58	0.8618	CYP71B40-1
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	12.80	0.8935	HSP70.7
AT5G45540			Protein of unknown function (D...		Potri.001G146800 [exp]	18.73	0.8596
AT3G60390	HD	HAT3	homeobox-leucine zipper protei...		Potri.002G136400 [exp]	19.13	0.8633	Pt-ATHB.8
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.016G099200 [exp]	19.44	0.8820
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.007G002400 [exp]	20.49	0.8687
AT3G19300			Protein kinase superfamily pro...		Potri.009G100400 [exp]	22.71	0.7855
AT5G11290			Plant protein of unknown funct...		Potri.003G208400 [exp]	27.49	0.8603

Compare expression of checked genes

Potri.002G126700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.