Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47380 701 / 0 Protein phosphatase 2C family protein (.1) AT1G68410 502 / 3e-177 Protein phosphatase 2C family protein (.1.2) AT1G09160 475 / 9e-167 Protein phosphatase 2C family protein (.1.2) AT4G31750 105 / 2e-25 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 105 / 7e-25 Protein phosphatase 2C family protein (.1) AT5G24940 105 / 1e-24 Protein phosphatase 2C family protein (.1) AT5G53140 105 / 1e-24 Protein phosphatase 2C family protein (.1) AT1G43900 101 / 1e-23 Protein phosphatase 2C family protein (.1) AT4G26080 100 / 6e-23 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT2G40180 100 / 7e-23 ATHPP2C5 phosphatase 2C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G031200 [exp] 796 / 0 AT1G47380 717 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G121600 [exp] 507 / 2e-179 AT1G68410 635 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G123600 [exp] 499 / 3e-176 AT1G68410 679 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021200 [exp] 466 / 5e-163 AT1G09160 642 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G011600 [exp] 464 / 2e-162 AT1G09160 604 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.015G019200 [exp] 109 / 2e-26 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 107 / 2e-26 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.012G002100 [exp] 108 / 3e-26 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 106 / 8e-26 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006485 [exp] 703 / 0 AT1G47380 728 / 0.0 Protein phosphatase 2C family protein (.1) Lus10009763 [exp] 692 / 0 AT1G47380 719 / 0.0 Protein phosphatase 2C family protein (.1) Lus10042659 [exp] 691 / 0 AT1G47380 704 / 0.0 Protein phosphatase 2C family protein (.1) Lus10021737 [exp] 684 / 0 AT1G47380 701 / 0.0 Protein phosphatase 2C family protein (.1) Lus10020666 [exp] 479 / 3e-168 AT1G09160 662 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10019012 [exp] 113 / 9e-28 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 110 / 5e-27 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 108 / 1e-26 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 108 / 1e-26 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 107 / 2e-26 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.002G127300.1 pacid=42778970 polypeptide=Potri.002G127300.1.p locus=Potri.002G127300 ID=Potri.002G127300.1.v4.1 annot-version=v4.1 ATGATGGCTGCTGCGAGGGAACATCATACGGTGCCGCTCTCGGTGCTTTTAAAGCGAGAATTGGCGAGTGAGAAGGTAGAGAAGCCGGAGATTTTATACG GACAGGCTTGTCAGAGCAAGAAAGGGGAGGATTTCACCTTGTTAAAAACTGAATGCCAGAGAATCGTGGGTGATGGCATTACTACTTATTCTGTTTTCGG GTTATTTGATGGACATAATGGGTCTGCAGCAGCAATATACACCAAGGAGAATCTACTAAATAACTTCATAGCCGCCATGCCTCCAGATCTTAACAGAGAT GAATGGGTAGCAGCACTTCCAAGAGCTTTAGTTGCAGGGTTTGTCAAAACAGATAAAGATTTTCAACAGAGAGCTCGAACATCTGGAACAACTGTCACCT TTGCAGTAATCGAAGGATTGGTCATAACTGTGGCATCTGTTGGCGATTCCCGTTGCATTCTTGAATCTGCTGAAGGTGATCTCTATTACTTGTCAGCAGA TCATCGGCTTGAATGCAATGAAGAGGAGAGGGAGCGCATTACTGCAAGTGGGGGTGAGGTGGGACGACTAAATACTGGCGGTGGTGCAGAGATTGGCCCT TTGAGATGTTGGCCTGGTGGCTTATGTCTTTCGCGATCTATCGGGGATGTGGATGTTGGCGAGTACATTGTTCCTGTTCCTTATGTGAAGCAAATTAAGT TGTCTACTGGGGGTGGTAGGCTTATTATCTCAAGTGATGGTGTTTGGGATGCTTTATCTGATGAAGTGGCTCTTGATTGTTGCCGTGGGATGCCAGTGGA AGCTGCAGCTGCACAAATTGTTAAGGAAGCAGTGCAGGTGAAAGGACTTCGAGATGATACAACCTGCATTGTGATTGATATAGTACCACCAGAGAAACCA GCTGCCCCTTTGCCACCACCAAAAAAGCTTGGAAGAGGAGTATTCAAGTCCATGTTTCGCAAAAGGTCCCTGGAATCTTCTTCTCAAATTGATAAGGAAT ATCTGGAACCAGATGTGGTTGAGGAACTATTTGAGGAAGGATCTGCCATGCTTTCAGAAAGGTTAGATACGAAATACCCACTTTGCAAAATGTTTAAGCT GTTTATATGTGCAGTCTGTCAAGTAGAGATAAAACCTGACGAGGGTATTTCAATACATGTTGGTTCATCTGATTTTGGAAAATTACGTCCCTGGGATGGC CCTTTCCTTTGCTCAAGTTGCCAAGAGAAAAAAGAAGCAATGGAAGGGAAAAGACCACCAGGAGATAGGCATAGCAGTGATAGTGATTAG
AA sequence Show only first row Show all	>Potri.002G127300.1 pacid=42778970 polypeptide=Potri.002G127300.1.p locus=Potri.002G127300 ID=Potri.002G127300.1.v4.1 annot-version=v4.1 MMAAAREHHTVPLSVLLKRELASEKVEKPEILYGQACQSKKGEDFTLLKTECQRIVGDGITTYSVFGLFDGHNGSAAAIYTKENLLNNFIAAMPPDLNRD EWVAALPRALVAGFVKTDKDFQQRARTSGTTVTFAVIEGLVITVASVGDSRCILESAEGDLYYLSADHRLECNEEERERITASGGEVGRLNTGGGAEIGP LRCWPGGLCLSRSIGDVDVGEYIVPVPYVKQIKLSTGGGRLIISSDGVWDALSDEVALDCCRGMPVEAAAAQIVKEAVQVKGLRDDTTCIVIDIVPPEKP AAPLPPPKKLGRGVFKSMFRKRSLESSSQIDKEYLEPDVVEELFEEGSAMLSERLDTKYPLCKMFKLFICAVCQVEIKPDEGISIHVGSSDFGKLRPWDG PFLCSSCQEKKEAMEGKRPPGDRHSSDSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	0	1
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.013G005700 [exp]	6.40	0.7304	Pt-XTH3.1
AT2G19880			Nucleotide-diphospho-sugar tra...		Potri.018G087700 [exp]	7.74	0.7176
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.001G471500 [exp]	8.12	0.6566
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	8.36	0.7222
AT5G38700			unknown protein		Potri.002G198800 [exp]	10.19	0.7107
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	10.48	0.6854
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.005G247700 [exp]	19.59	0.6692
AT3G26700			Protein kinase superfamily pro...		Potri.002G237600 [exp]	19.89	0.6367
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	22.31	0.6727	ATSEB1.1
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	24.73	0.6634

Compare expression of checked genes

Potri.002G127300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.